PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016452131.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 493aa    MW: 56553.4 Da    PI: 8.2112
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016452131.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.52.4e-1316103598
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      + ++v   g+l++p +f++ehg +     t++l  ++   W v++  +k +++++l +GW+eF + + +    f++Fk+ ++s f  +v++f+
  XP_016452131.1  16 IVEPSVIDDGQLRMPDPFVQEHGDE--LLETVKLIVPTDDFWCVNV--KKVGKMIWLHDGWREFMEHHSIGCWYFLLFKYGKNSHF--NVHIFD 103
                     56789999**************866..6779***************..********************************998999..999997 PP
2B367.42e-21323415196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                     f ++l+  +v ++++l +p +f++e++ k+     + l+d+ g++W+ ++   +++ + +l++GW +Fv++ngL +gD +vF+l+++ ++ el++
  XP_016452131.1 323 FMQILVEYNVVRNRILNIPANFVREYMPKT--LELIELQDSAGNKWKARC--IRRKMHLFLSEGWFKFVRDNGLLVGDACVFELIKDlKTDELML 413
                     778899999*****************8553..448***************..999999***************************9999888877 PP

                     EE CS
              B3  95 kv 96 
                     kv
  XP_016452131.1 414 KV 415
                     65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.69E-188105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-1810105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.65912105IPR003340B3 DNA binding domain
SMARTSM010195.7E-913105IPR003340B3 DNA binding domain
PfamPF023621.6E-1015103IPR003340B3 DNA binding domain
CDDcd100172.24E-1415103No hitNo description
Gene3DG3DSA:2.40.330.101.1E-25314420IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-24316420IPR015300DNA-binding pseudobarrel domain
CDDcd100179.83E-24321419No hitNo description
PfamPF023621.9E-19323415IPR003340B3 DNA binding domain
PROSITE profilePS5086315.693323421IPR003340B3 DNA binding domain
SMARTSM010198.9E-20323421IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MEPRTYSYSS ASFYVIVEPS VIDDGQLRMP DPFVQEHGDE LLETVKLIVP TDDFWCVNVK  60
KVGKMIWLHD GWREFMEHHS IGCWYFLLFK YGKNSHFNVH IFDLNATEID YQCKDHGNAK  120
LGAISQSLSY GKEIICCVGD DKDDESSVEI VDPLETEQGP ESSAKSSRAK RCKILPRSKF  180
WHFYDTRSRT NKLHDEGRVL SEKNLNILGG SNLTKPLVGK LVQQNMDTPI YSAVVTGGVT  240
NQDNAQVGSE NDILQLNESK HKIHLDQYIQ IEPIADTRKS FTGQQWEKSV RRGRPHKRGR  300
AKATETNRAI NAAKMFKPEN PYFMQILVEY NVVRNRILNI PANFVREYMP KTLELIELQD  360
SAGNKWKARC IRRKMHLFLS EGWFKFVRDN GLLVGDACVF ELIKDLKTDE LMLKVHIFRS  420
RVEEKSTNLQ TCSVSEPTLS IGKNCLQFNE SKHTETSDAF GPVSSNRKQL QERYKEIIHR  480
PATGEICRAG KAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1930341929141B3 domain-containing transcription factor VRN1
4i1k_B2e-1930341929141B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769342.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLA0A1U7VN520.0A0A1U7VN52_NICSY; putative B3 domain-containing protein Os03g0621600
STRINGXP_009769342.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85571529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.16e-23B3 family protein