PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016452268.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 127aa    MW: 14623.8 Da    PI: 8.7142
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016452268.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.3e-162269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l   v+++G  +W   +++ g+ R++k+c++rw +yl
   XP_016452268.1 22 KGAWSEEEDNKLRAFVEKHGHSNWLQLPKYAGQMRCGKSCRLRWMNYL 69
                     79********************************************97 PP
2Myb_DNA-binding38.33.1e-1275110138
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 
                      +g+ + eE+el+++++++lG++ W+ Ia+ ++ gR+++
   XP_016452268.1  75 KGNYSHEEEELIIKLHNELGNR-WSVIAEQLP-GRSDN 110
                      7899******************.*********.***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-211571IPR009057Homeodomain-like
PROSITE profilePS5129421.9211773IPR017930Myb domain
SuperFamilySSF466891.39E-2719110IPR009057Homeodomain-like
SMARTSM007177.3E-132171IPR001005SANT/Myb domain
PfamPF002493.8E-152269IPR001005SANT/Myb domain
CDDcd001671.51E-102469No hitNo description
PROSITE profilePS500908.50270110IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.5E-1872110IPR009057Homeodomain-like
SMARTSM007170.004474122IPR001005SANT/Myb domain
PfamPF002493.4E-1175110IPR001005SANT/Myb domain
CDDcd001674.26E-777110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MVLIIAKKMV RTPSIDKNGM KKGAWSEEED NKLRAFVEKH GHSNWLQLPK YAGQMRCGKS  60
CRLRWMNYLR PGLKKGNYSH EEEELIIKLH NELGNRWSVI AEQLPGRSDN VGVEGFEPEG  120
FEADNLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2222111795B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766825.12e-90PREDICTED: myb-related protein Myb4-like
RefseqXP_016452268.12e-90PREDICTED: myb-related protein Myb4-like
SwissprotQ9LDR82e-43MY102_ARATH; Transcription factor MYB102
TrEMBLA0A1S3YJP35e-89A0A1S3YJP3_TOBAC; myb-related protein Myb4-like
TrEMBLA0A1U7VXW25e-89A0A1U7VXW2_NICSY; myb-related protein Myb4-like
STRINGXP_009766825.18e-90(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.17e-46MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]