PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016452552.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 232aa MW: 25903.6 Da PI: 6.9511

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016452552.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.6	6.1e-05	36	84	1	53
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 +r+ + erE+ R+++N+ f L l + + + Ka+iL ++ +++k+ XP_016452552.1 36 KRVHKAEREKLKREHLNELFLDLANALELS----EQTNGKASILNETARFVKD 84 79999********************998....68899999*99999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.84E-5	33	96	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.1E-6	33	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.09E-10	33	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.779	35	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MGAENPTSSA ENGGIAVETS PNGSPSCKKI QKKVPKRVHK AEREKLKREH LNELFLDLAN 60 ALELSEQTNG KASILNETAR FVKDMISQIK HLKRENIALL SESQYLSMEK KELQDDNSAL 120 EAQIGKLDGE VKEKVAETNL DLNLSLPETQ LPQLASQVPD NFLRLPGPEH PFQQMQMMNP 180 LYVVPLNSTP QAYPQPDTAK PAAMPTYCVK KPQARYPTPA DVWPSQILEK RP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009798054.1	1e-170	PREDICTED: transcription factor bHLH47-like
Refseq	XP_009798055.1	1e-170	PREDICTED: transcription factor bHLH47-like
Refseq	XP_016452552.1	1e-170	PREDICTED: transcription factor bHLH47-like
Refseq	XP_016452553.1	1e-170	PREDICTED: transcription factor bHLH47-like
TrEMBL	A0A1S3YKS4	1e-169	A0A1S3YKS4_TOBAC; transcription factor bHLH47-like
TrEMBL	A0A1U7YFP1	1e-169	A0A1U7YFP1_NICSY; transcription factor bHLH47-like
STRING	XP_009798054.1	1e-170	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4307	19	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	1e-44	bHLH family protein