PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016452580.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 364aa    MW: 41677.4 Da    PI: 6.753
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016452580.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-05203222120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  XP_016452580.1 203 FSCPVCFKTFNRYNNMQMHM 222
                     89*****************9 PP
2zf-C2H212.70.00038287307121
                     EEETTTTEEESSHHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                     + C +Cgk F  + + ++H +
  XP_016452580.1 287 FMCRKCGKAFAVRGDWRTHEK 307
                     89*****************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.38203225IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64203230IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.2E-6203222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280205225IPR007087Zinc finger, C2H2
SuperFamilySSF576671.72E-6269307No hitNo description
Gene3DG3DSA:3.30.160.608.2E-6274307IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808287307IPR007087Zinc finger, C2H2
SMARTSM0035549287307IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MTDPNYQPNF YHSQQQYWLK FNPNNTHHFP SSNSKPPPSF LHNFYSSNYQ SSYNHHPPPP  60
PSPPLKEALP LLSLSPIKHD RGDEVVVQEP VDCCTSNMDV DNKIKKATDH NCSPKNDAAG  120
EQEEEENDEN DVTVALHIGL PNPSAADLAS ILSSNRDEEE EETYHDHDND VTNMNMNMIN  180
TRLNKGQYWI PTPSQILIGP TQFSCPVCFK TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ  240
PTGMLRLPCY CCTPGCRNNI DHPRAKPLKD FRTLQTHYKR KHGIKPFMCR KCGKAFAVRG  300
DWRTHEKNSG KLWYCICGSD FKHKRSLKDH IKAFGQGHGA YGIDNFEEEE DPASEVEQDN  360
ESIL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755151e-138HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016452580.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-139ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1S3YKE90.0A0A1S3YKE9_TOBAC; zinc finger protein WIP2-like
STRINGXP_009792207.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-137C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]