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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_016452590.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | bHLH | ||||||||
| Protein Properties | Length: 253aa MW: 28710.2 Da PI: 6.2536 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 37.1 | 5.9e-12 | 81 | 133 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
++++h e+Er+RR+++ + ++ Lr+ lP ++K s +e +A +YI +Lq
XP_016452590.1 81 KKVMHREIERQRRQEMATLYASLRQQLPLE--IIKGKRSTSEHILEAANYIEYLQ 133
6899*************************7..4*********************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 9.29E-14 | 77 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 8.78E-10 | 78 | 137 | No hit | No description |
| PROSITE profile | PS50888 | 13.033 | 80 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 3.9E-9 | 81 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 4.5E-9 | 82 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 0.0042 | 86 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 253 aa Download sequence Send to blast |
MMDNFHSIFP LQQDVDDNDS HELLYNNPCN FLYQQDLVTD FAPLESDKNT LSFNNNQKEN 60 KVGKASAASL PVEKTSDDKQ KKVMHREIER QRRQEMATLY ASLRQQLPLE IIKGKRSTSE 120 HILEAANYIE YLQKNVRNLE DKREKLNKTS NSSNLDYTKS GRSSTSDSSS STNVTVKQCL 180 DGMEILVNCG VESEGFRLSR VLEVLLQEGL NIVNCSCTKT STSLLHTIRT EVASQARIDV 240 HVIQQKLSDI SFS |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009804982.1 | 0.0 | PREDICTED: transcription factor bHLH118-like | ||||
| Refseq | XP_009804989.1 | 0.0 | PREDICTED: transcription factor bHLH118-like | ||||
| Refseq | XP_016452590.1 | 0.0 | PREDICTED: transcription factor bHLH118-like | ||||
| TrEMBL | A0A1S3YKF9 | 0.0 | A0A1S3YKF9_TOBAC; transcription factor bHLH118-like | ||||
| TrEMBL | A0A1U7YLP6 | 0.0 | A0A1U7YLP6_NICSY; transcription factor bHLH118-like | ||||
| STRING | XP_009804982.1 | 0.0 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA598 | 24 | 109 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G51790.1 | 3e-33 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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