PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016452614.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 668aa    MW: 73624.3 Da    PI: 6.4398
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016452614.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64.1e-15252311155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_016452614.1 252 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 311
                     57*******************666664478446*************************98 PP
2AP246.87.5e-15354405155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_016452614.1 354 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 405
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.5E-12252311IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-17252321IPR016177DNA-binding domain
CDDcd000187.62E-23252321No hitNo description
Gene3DG3DSA:3.30.730.108.4E-16253320IPR001471AP2/ERF domain
PROSITE profilePS5103219.23253319IPR001471AP2/ERF domain
SMARTSM003801.2E-29253325IPR001471AP2/ERF domain
PRINTSPR003676.8E-6254265IPR001471AP2/ERF domain
PfamPF008479.4E-10354405IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-17354414IPR016177DNA-binding domain
CDDcd000183.89E-25354415No hitNo description
Gene3DG3DSA:3.30.730.107.0E-18355413IPR001471AP2/ERF domain
SMARTSM003802.7E-33355419IPR001471AP2/ERF domain
PROSITE profilePS5103219.177355413IPR001471AP2/ERF domain
PRINTSPR003676.8E-6395415IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MASSMNNWLG FSLSPHEELT SQTSQEISGS VDVSGECFDL TSHDSTLPSL NVVPHTPFGI  60
FEAFNRNHQS QDWSSHDPNY KTTSEMSMLM GISCNTSQHL ENQEPPKLEN FLGIGEVQNN  120
NNNNINGDYS IYSSVTSTTN NIGSNTNNNT IGLSMIKNWL RNNPNTSTPS LQDDKKEGEG  180
VVVGGGNNAQ SLSLSMSTGG GGGGGGENSC SSENNKQQEN ANGTNGSIDA QNNGAIEAVP  240
RKSIDTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ TRKGRQVYLG GYDKEEKAAR  300
AYDLAALKYW GPTTTTNFPI SNYEKELDEM KHMTRQEYVA SLRRKSSGFS RGASIYRGVT  360
RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFEINRYDVK  420
SILESSTLPI GGAAKRLKDA EQADQIALDY QRVSQENIGS HLTNGTISSY GANANHIWSN  480
IAFQQAQAQP LNMHYPYSQQ QQQQQRLWCK QEVQDSDHLS STQNFQDFHQ LQHGNIAHNF  540
LQPTSALHNL MGLDTSSTSM EHNNVTYQGV GYASSPSGGF ALPQLSQGNG YGENEVKQQL  600
GNENIFGYYH SQQSTSNGLV KVAGLYDHQE SVNCNNWMST AVPALASRNN TVAICHGGAP  660
TFTVWNDT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016452614.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A1S3YK470.0A0A1S3YK47_TOBAC; AP2-like ethylene-responsive transcription factor AIL1
STRINGXP_009610983.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70992131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-142AP2 family protein