PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016453059.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 252aa    MW: 27857.2 Da    PI: 7.1816
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016453059.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.7e-13187232655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  XP_016453059.1 187 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKFLQ 232
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.958181231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16184241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.24E-12185236No hitNo description
Gene3DG3DSA:4.10.280.101.6E-16186243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-10187232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-13187237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MQRGSGGAGG VGGGLSRYRS APATWLEALL ESDTENEVVL NPSSPILHSP NKPPPHPSTT  60
QQQLPELVKP ETRFTGDPGL FESGGSSNFL RQQSSPAEFL SHINSDGYFS SYGIPSSLSY  120
ISQPIKRPRE DDSESSPRKL SNHLKGEPSG QLHGSGGSLD AEMEKLMDDL VPCKVRAKRG  180
CATHPRSIAE RVRRTRISDR IRKLQELVPN MDKQTNTADM LEEAVEYVKF LQKQIQELME  240
HQKKCTCSEK DQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754452e-50HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755182e-50HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788006.10.0PREDICTED: transcription factor bHLH80-like isoform X1
RefseqXP_016453059.10.0PREDICTED: transcription factor bHLH80-like
SwissprotQ9C8P87e-68BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A1S3YLE90.0A0A1S3YLE9_TOBAC; transcription factor bHLH80-like
TrEMBLA0A1U7XED00.0A0A1U7XED0_NICSY; transcription factor bHLH80-like isoform X1
STRINGXP_009788006.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117871923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-58bHLH family protein