PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016453403.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 199aa MW: 21771.8 Da PI: 7.268

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016453403.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.5e-39	18	78	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCds ntkfCyynny+lsqPr+fCk+C+ryWtkGG+lrn+PvGg++rkn k+s XP_016453403.1 18 EQEILKCPRCDSINTKFCYYNNYNLSQPRHFCKNCKRYWTKGGTLRNIPVGGASRKNTKRS 78 57899****************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	14	70	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-33	20	76	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.807	22	76	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	24	60	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MNMHDSSVYS EINPQFPEQE ILKCPRCDSI NTKFCYYNNY NLSQPRHFCK NCKRYWTKGG 60 TLRNIPVGGA SRKNTKRSSS SSNSKRSSTT SYLSSSSAAQ PKSEPFPIPN VAVFDQNSSI 120 HGPFSSLLTS NGPEIGNLFE ALKPNVSDSG FVSGSDAAAQ SENNNTDEYL FPVQSGEDSN 180 CCNGWTDLAI YSAPGSSFQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	5e-50	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016453403.1	1e-146	PREDICTED: dof zinc finger protein DOF3.1-like
TrEMBL	A0A1S3YMT4	1e-144	A0A1S3YMT4_TOBAC; dof zinc finger protein DOF3.1-like
STRING	XP_009758019.1	1e-142	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-35	DOF zinc finger protein 1