PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016453563.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WOX
Protein Properties Length: 245aa    MW: 27968.2 Da    PI: 7.2635
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016453563.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.5e-201877357
                    --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    +R+++tkeq++ Le+ +++  r+psae++++++ +l    +++ ++V++WFqN++a++++
  XP_016453563.1 18 TRWNPTKEQIDLLESIYRQgIRTPSAEQIQQITLRLrafgHIEGKNVFYWFQNHKARQRQ 77
                    7*****************99**************************************97 PP
2Wus_type_Homeobox114.55.3e-371779365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        tRW+Pt+eQi +Le++y++G+rtP++e+iq+it +L+++G+ie+kNVfyWFQN+kaR+rqkq
     XP_016453563.1 17 GTRWNPTKEQIDLLESIYRQGIRTPSAEQIQQITLRLRAFGHIEGKNVFYWFQNHKARQRQKQ 79
                       68***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.6411378IPR001356Homeobox domain
SMARTSM003892.1E-41582IPR001356Homeobox domain
SuperFamilySSF466894.71E-121782IPR009057Homeodomain-like
PfamPF000461.3E-171877IPR001356Homeobox domain
CDDcd000861.11E-61879No hitNo description
Gene3DG3DSA:1.10.10.605.8E-81977IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MNDDNNVEML ASETPVGTRW NPTKEQIDLL ESIYRQGIRT PSAEQIQQIT LRLRAFGHIE  60
GKNVFYWFQN HKARQRQKQK QDKFAYFNRL LHRTNVFPPP RPNVVCSPYY TPQNNLGFYQ  120
QYPVPSLILQ GPGGFKRRAT CDAAVYINAT YSQENSTNMA HLSPNEKQFN HQETLNLFPL  180
HPTGILQERT TSSSSPSAHD QSTIPSNYTP SNLVEANCFT DLGIGAGDHQ VFNFLCEEGP  240
CESHY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754455e-75HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016453563.10.0PREDICTED: WUSCHEL-related homeobox 2-like
TrEMBLA0A1S3YN920.0A0A1S3YN92_TOBAC; WUSCHEL-related homeobox 2-like
STRINGXP_009758504.11e-175(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114141925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.12e-40WUSCHEL related homeobox 2