PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016453703.1

Common Name

NtabSPL6-6

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 523aa MW: 58200.2 Da PI: 8.1876

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016453703.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133	1e-41	216	291	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC++dls+ k+yh+rhkvC+ hsk++vv+v+g+eqrfCqqCsrfh l efDe+krsCr+rLa+hnerrrk+q XP_016453703.1 216 CQVHGCNKDLSSSKDYHKRHKVCDEHSKTAVVIVNGIEQRFCQQCSRFHLLAEFDEGKRSCRKRLAGHNERRRKPQ 291 **************************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.9E-34	210	277	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.607	213	290	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.57E-39	214	295	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.0E-32	216	289	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence Send to blast
MEPLSYALEG RGFLFPDNVE LPVDTLSRSR NIVKEWNLNP FCDVDKSICG PSQEITESTG 60 LLESGIADIF KKSAASNSCP GALSGEIGNG SMLELGAMFN HSATKSNNLM SLPIGLKLDE 120 LTDYGEVRTS QSSKESSVLS SPESSLPTGK ATQRKSLHSQ FPISQVRGQK GEESTVYREV 180 KSNQSLKRNL DLSSVNSSLQ GKRLRTTNLH SEVPFCQVHG CNKDLSSSKD YHKRHKVCDE 240 HSKTAVVIVN GIEQRFCQQC SRFHLLAEFD EGKRSCRKRL AGHNERRRKP QFDTHWGSRF 300 LDMTQRRVPF LFPEILPGSF FYQENYEVNN NNQNLKLERK PFCISQLAMS VTRGQSPAES 360 IQHQYGVRKQ DLSKVPVGST LLSVQEFSAG QNSSCALSLL SAHSQNLLHN STDISPTPPW 420 MVKGNDHAYI KDDHHNLAKS PRVSVAKSST PIEQDGVVHV PEIQRDGHDQ RANSMNSKNC 480 LSPEGGPTMN LVQLSSHLLR VEQEKNSVQV KQENDIFSSF AST

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence Send to blast

MEPLSYALEG RGFLFPDNVE LPVDTLSRSR NIVKEWNLNP FCDVDKSICG PSQEITESTG  60
LLESGIADIF KKSAASNSCP GALSGEIGNG SMLELGAMFN HSATKSNNLM SLPIGLKLDE  120
LTDYGEVRTS QSSKESSVLS SPESSLPTGK ATQRKSLHSQ FPISQVRGQK GEESTVYREV  180
KSNQSLKRNL DLSSVNSSLQ GKRLRTTNLH SEVPFCQVHG CNKDLSSSKD YHKRHKVCDE  240
HSKTAVVIVN GIEQRFCQQC SRFHLLAEFD EGKRSCRKRL AGHNERRRKP QFDTHWGSRF  300
LDMTQRRVPF LFPEILPGSF FYQENYEVNN NNQNLKLERK PFCISQLAMS VTRGQSPAES  360
IQHQYGVRKQ DLSKVPVGST LLSVQEFSAG QNSSCALSLL SAHSQNLLHN STDISPTPPW  420
MVKGNDHAYI KDDHHNLAKS PRVSVAKSST PIEQDGVVHV PEIQRDGHDQ RANSMNSKNC  480
LSPEGGPTMN LVQLSSHLLR VEQEKNSVQV KQENDIFSSF AST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-29	211	289	6	84	squamosa promoter binding protein-like 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LC073294	0.0	LC073294.1 Nicotiana tabacum NtabSPL6-6 mRNA for squamosa promoter binding protein NtabSPL6-6, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001312181.1	0.0	squamosa promoter-binding-like protein 6
Refseq	XP_009627050.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
Refseq	XP_016453703.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6
Refseq	XP_018633598.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
Refseq	XP_018633599.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
TrEMBL	A0A125SZN3	0.0	A0A125SZN3_TOBAC; Squamosa promoter binding protein NtabSPL6-6
STRING	XP_009627050.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6831	19	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	1e-52	SBP family protein

Link Out ? help Back to Top
Entrez Gene	107778036

Publications ? help Back to Top
Han YY,Ma YQ,Li DZ,Yao JW,Xu ZQ Characterization and phylogenetic analysis of fifteen NtabSPL genes in Nicotiana tabacum L. cv. Qinyan95. Dev. Genes Evol., 2016. 226(1): p. 1-14 [PMID:26635304]