PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016453710.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 426aa    MW: 47953.3 Da    PI: 7.8509
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016453710.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.8e-09130150526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ f++ G C++Gd+C FaHg
  XP_016453710.1 130 VCSEFRK-GNCSRGDNCEFAHG 150
                     7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.59E-5124154IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6125151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.45126152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5129152IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-7130150IPR000571Zinc finger, CCCH-type
SMARTSM003562.4160183IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.287160184IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MEGLCAEQHH HKFHPSHQLY LNKKSLRDID IPPRKLLSRR SNLSVDPVSD MFMDSPKSDS  60
DTLFQKFLPY NSLDEDDSDP YSSDHFRMYE FKVRRCTRSR SHDWTDCPFA HPGEKARRRD  120
PRRFHYSGTV CSEFRKGNCS RGDNCEFAHG VFECWLHPTR YRTEACKDGK NCKRKVCFFA  180
HTPRQLRVLP PSCHESSGSG SSPRNSPVHE KKYRNLNHCC MFCHSVSASP TSTLMGMSHM  240
SPPMSPSLSP PLSPAKTQFS SPMMSRYSDR FGSVESSFGM GQLDHAGLMS YKDALTELVT  300
SLEAMNVNAN HEANSSSSAA AAVNNFDGKL PWLDVSFNNN NYDDQQQFLL SPYSTPSPSP  360
VSSSRTKFYT RDFPSPSPVS SSGLSFSPVS SSNISFVEDT NNATNRYYNE NGLGGPDFGW  420
VNDLLT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016453710.10.0PREDICTED: zinc finger CCCH domain-containing protein 2-like
TrEMBLA0A1S3YP140.0A0A1S3YP14_TOBAC; zinc finger CCCH domain-containing protein 2-like
STRINGXP_009595391.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105952125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-76C3H family protein