PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016453986.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 291aa    MW: 33480.7 Da    PI: 7.4968
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016453986.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY62.29e-20125185259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D+y+WrKYG K++ +s++pr YYrCt++   + +++k+++r +edp + ++tY g+H ++
  XP_016453986.1 125 EDEYEWRKYGHKVILNSKYPRCYYRCTYKydqEGQATKRIQRIKEDPIIYQTTYFGHHICK 185
                     7***************************998899************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-20111186IPR003657WRKY domain
SuperFamilySSF1182909.68E-20117186IPR003657WRKY domain
PROSITE profilePS5081116.788119182IPR003657WRKY domain
SMARTSM007743.8E-27124186IPR003657WRKY domain
PfamPF031061.1E-18125185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MENFESPRTA RKRLIKELIQ GKEFVVQLQT LLQQPLAGDH QPGSAHDLIL KIWASFTDAL  60
SELTAFPRSK GLFQIPEAAD NLGSKDFGSE FRKDKLQVTK NRSGGCYRRR KNSESWMMRE  120
SAKKEDEYEW RKYGHKVILN SKYPRCYYRC TYKYDQEGQA TKRIQRIKED PIIYQTTYFG  180
HHICKRSQKE PQCQITITPE SSGLMREYPP FEANPKVPCK NDQPPSSDNP TTKEEEESKE  240
QTDSNIWKDF MVSSPSVPAI MAADDISTSL HGLDIDGIFG DFHFAAATEF S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-15125185969OsWRKY45
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016453986.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A1S3YNY60.0A0A1S3YNY6_TOBAC; probable WRKY transcription factor 70
STRINGXP_009781810.11e-143(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61992233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-29WRKY DNA-binding protein 70