PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016454588.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 204aa    MW: 24186.7 Da    PI: 9.8888
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016454588.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.48.1e-32261182103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye+++d+ ++++isws +g+sf+++d+ ++ +k+Lp+yFkh+n++SF+ QLn YgFkk+  ++         we++h +F+ gkk+ll++
  XP_016454588.1  26 FLTKTYEMVDDPITNSIISWSLTGTSFIIWDHIRLCSKLLPQYFKHENLSSFIYQLNNYGFKKIGLQK---------WEYEHYWFQPGKKHLLSN 111
                     9***************************************************************9998.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     ikr++++
  XP_016454588.1 112 IKRRNQN 118
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.7E-4322115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.6E-3223115IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.81E-2723115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.6E-2826115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-172649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-176476IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-177789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MATNNISQFS GSDGAIVLRK PRIPPFLTKT YEMVDDPITN SIISWSLTGT SFIIWDHIRL  60
CSKLLPQYFK HENLSSFIYQ LNNYGFKKIG LQKWEYEHYW FQPGKKHLLS NIKRRNQNQK  120
VQEHCYQENY YNGVETELRS QRDFNVTLMS EIEKMKEKQD DLANGIASLR EYLEKSDAKF  180
RKLLFFLARG IKQVTKKRKV EDTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-232311526129Heat shock factor protein 1
5d5v_B6e-232311526129Heat shock factor protein 1
5d5v_D6e-232311526129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016454588.11e-152PREDICTED: heat stress transcription factor A-9-like
TrEMBLA0A1S3YR271e-151A0A1S3YR27_TOBAC; heat stress transcription factor A-9-like
STRINGXP_009594956.11e-148(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13740910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54070.12e-43heat shock transcription factor A9