PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016454637.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 427aa    MW: 48842.4 Da    PI: 9.2048
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016454637.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.46.5e-171051243
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                     i+n++ r+ t+ kR++g+ KKA ELS+LC+++ ++ii++++
  XP_016454637.1 10 LIKNERSRNSTYQKRKKGLEKKADELSTLCQVKLCMIIYGQK 51
                    59**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.04151IPR002100Transcription factor, MADS-box
CDDcd002662.89E-20285No hitNo description
SuperFamilySSF554552.09E-20291IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-8323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-161151IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-83859IPR002100Transcription factor, MADS-box
PfamPF142444.2E-15312359IPR029472Gag-polypeptide of LTR copia-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MGRRKIGMEL IKNERSRNST YQKRKKGLEK KADELSTLCQ VKLCMIIYGQ KDSEPTIWPD  60
KDTIRSLIDS YRARSDDDQR LRTHDLSFYF RDLTRKVEIE SSKLRKKNFE AKYPTWDQLY  120
DNLSSDQLKQ LSALLGAKIE FMKQRLEFLK GTQTISLDDM HAMSFLGKQI TQPNTQCVMQ  180
SLVRKSSLQL EIIEQQQQQQ FVPPINFTET EIMQFGQHQM IRRDNHQSSG IPHCTATGYE  240
PHLAMLNTSG NIIENQQSRF LLDPSTFSSK LPPSFSTSSI ITTGTDSAPT LSLSGLTSQA  300
VNHDVNHPYF LHSSDAPGMT LVTSPFDGRG FSGWRRSILI ALSAKNKLVF INGVCDEPAL  360
DSKDHAQWSR YNDMVTSWLL NSLTKEIEDN VIYSKSAKEL WNSLEHRFGQ SNGDKLYHLQ  420
KKIAKTV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016454637.10.0PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A1S3YRE90.0A0A1S3YRE9_TOBAC; agamous-like MADS-box protein AGL80
STRINGXP_009788319.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.14e-20M-type_MADS family protein