PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016454660.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 826aa    MW: 90179.3 Da    PI: 5.0634
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016454660.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.23.2e-095885127
                    --S---SGGGGTS.--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartG.tCkyGdrCkFaHgp 27
                    +kt+lC++f+r+   C++Gd+C++aHg+
  XP_016454660.1 58 WKTSLCSYFRRNDnSCSHGDTCRYAHGE 85
                    8**********87*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.5E-135191IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-65690IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5495786IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-45785IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-75885IPR000571Zinc finger, CCCH-type
PROSITE profilePS5168744.701247826IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533355.94E-48250275IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533355.94E-48307442IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533355.94E-48485602IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1505.1E-63499602IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138472.0E-9546603IPR025714Methyltransferase domain
CDDcd024405.13E-7548620No hitNo description
Gene3DG3DSA:3.40.50.1505.1E-63709764IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059582.1E-7712760IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533355.94E-48712826IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PROSITE patternPS012300720752IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1505.1E-63801826IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MSTETLNPKI NGEDLTEQLH SPETSTNPTV EIAPTEKRKR EETETETEQQ QQQPNPLWKT  60
SLCSYFRRND NSCSHGDTCR YAHGESELRP RPDNTWDPTS ERAKKIAKKD DGGDKAENKE  120
EEKCHDVMMT EAVDDEEECS SSGTGLSKCL VNLPMKWSSD NLRCFLKQHE LNGKLVGNKN  180
LKVGDVIPRP FERKGNSAIS SSPASQQGEK QTPTGDSLDS NKISDETEAE DPLFSDSVLK  240
GRSVRDVVTP LANIPYADQL EQKKSSLMQT LKKLTRNARK ACPNGVSLPE WILKSRDIGG  300
QPCKLEGIID SPLIEGYRNK CEFSVGYSVL GKPTVGFLLG NFREGVTAVE EPVNCPNVSR  360
ISCKYAAIFQ EFLQKSTLPI WNRLNNTGFW RQLTVREGRM PGNNVEVENP DASISEVMLI  420
VQVCTLALDD AVVNDEFQSM AKAFAIGASS ASPTLPLTVL VVQDHTGISN VAPADASLRV  480
LPFPKGERYS ELQADNTVAE AKIHDFINGL KFCISPTAFF QVNTLAAEKL YSLAGDWASL  540
GPDTLLFDVC CGTGTIGLTL ANRVGMVVGI EMNASAVSDA QRNAEINGIK NCRFFCGKAE  600
NVMGSVLREY LTSPPKVDGI PDIQENTTST EKTDSIVNAS ETDEGSGIGS AAAPIGNTDS  660
TDNTVEPEGK AGLERTNGTS LSESSAGCIT ESETQLGKSC SSDNLTTSVR HFKNVVAIVD  720
PPRVGLHPTV IKLLRTNSRL RRLVYISCNP ESLVANAIEL CTPSPDEAER GNNKNNRGWR  780
NMSSASLARH RTKSMPSSEP FQPVKAMAVD LFPHTPHCEL VMLLER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A1e-1928661686384Uncharacterized RNA methyltransferase SP_1029
5xj2_A2e-1928661686384Uncharacterized RNA methyltransferase SP_1029
5xj2_B2e-1928661686384Uncharacterized RNA methyltransferase SP_1029
5xj2_C2e-1928661686384Uncharacterized RNA methyltransferase SP_1029
5xj2_D2e-1928661686384Uncharacterized RNA methyltransferase SP_1029
5zq0_A2e-1928661687385Uncharacterized RNA methyltransferase SP_1029
5zq1_A1e-1928661686384Uncharacterized RNA methyltransferase SP_1029
5zq8_A2e-1928661686384Uncharacterized RNA methyltransferase SP_1029
5zq8_B2e-1928661686384Uncharacterized RNA methyltransferase SP_1029
5zth_A2e-1928661687385Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2124375e-83AC212437.2 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence.
GenBankHG9755235e-83HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016454660.10.0PREDICTED: zinc finger CCCH domain-containing protein 24-like isoform X2
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A1S3YRU20.0A0A1S3YRU2_TOBAC; zinc finger CCCH domain-containing protein 24-like isoform X2
STRINGXP_009592143.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]