PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016455342.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 209aa MW: 24164.7 Da PI: 7.3917

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016455342.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.2	2.5e-27	44	132	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YAk+vGF +r+++ ++s+ +++i +r++ C+k+g+ + k++ r+tr++tr gCka++ vk +k++kw+vt++++eH+H+l XP_016455342.1 44 FYDDYAKRVGFIMRIDQCRRSEVDKRILSRRLSCNKQGYYVKMKNHYGPPRKTRTSTREGCKAMMLVKVNKSDKWVVTRFVKEHTHPLI 132 9*****************************************999**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.4E-25	44	132	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MDLEAGAATI DCSAESQLVT CEDNVVREPF IGMEFESEDA AKGFYDDYAK RVGFIMRIDQ 60 CRRSEVDKRI LSRRLSCNKQ GYYVKMKNHY GPPRKTRTST REGCKAMMLV KVNKSDKWVV 120 TRFVKEHTHP LISSGCSSHN AMDKKDRRIL ELSMELEHQD KLCDLYREQL ITLLENVEQQ 180 MELLSKKIEV AVNNVKEIEA EVQKPPNNQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	1e-137	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016455342.1	1e-157	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_016455343.1	1e-157	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1S3YTJ7	1e-155	A0A1S3YTJ7_TOBAC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_009626414.1	1e-155	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11602	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-65	FAR1 family protein