PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016455357.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 141aa    MW: 15261.5 Da    PI: 10.1585
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016455357.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding284.9e-09555147
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqky 47
                     +++WTteE+  l+ +v+++G       ++I + +    R+  ++k++w+++
   XP_016455357.1  5 KQKWTTEEEAALKLGVAKYGVAsgaPYSKIQSLLVlRSRSNVDIKDKWRNL 55
                     79******************999999***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.224160IPR017930Myb domain
SuperFamilySSF466893.36E-10257IPR009057Homeodomain-like
SMARTSM007172.8E-8458IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-11555IPR009057Homeodomain-like
PfamPF002493.8E-7555IPR001005SANT/Myb domain
CDDcd116603.77E-15655No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MGAPKQKWTT EEEAALKLGV AKYGVASGAP YSKIQSLLVL RSRSNVDIKD KWRNLHAMAS  60
GRGSRQPGRT GCKSIQPTVK HVDSPLHVSA VFENGIEVLD AKSLAASYEK VEDVGSKEAI  120
SRLVNHLEVQ SFGMATLKTT I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016455357.11e-101PREDICTED: single myb histone 5-like
RefseqXP_016455364.11e-101PREDICTED: single myb histone 5-like
TrEMBLA0A1S3YTL01e-99A0A1S3YTL0_TOBAC; single myb histone 5-like
STRINGXP_009622790.12e-65(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51222235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-19telomere repeat binding factor 1