PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016455407.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 123aa MW: 14012.2 Da PI: 8.4795

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016455407.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.6	8.4e-38	5	105	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk lrr+C+++C++ pyfp ++p++f +vhk++Gasnv k+l++++e++r d+++sl+ eA +r++dPvyG+vg+++ l++++ +++ +la XP_016455407.1 5 RCAACKQLRRRCPSNCIFLPYFPPNNPQRFSYVHKVYGASNVGKMLQQVQEHQRADVADSLYLEAYCRIKDPVYGCVGIVTLLHEEIYHVQCQLA 99 6******************************************************************************************** PP DUF260 96 llkeel 101 ++++++ XP_016455407.1 100 KVQAQI 105 9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.745	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.7E-38	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MTSSRCAACK QLRRRCPSNC IFLPYFPPNN PQRFSYVHKV YGASNVGKML QQVQEHQRAD 60 VADSLYLEAY CRIKDPVYGC VGIVTLLHEE IYHVQCQLAK VQAQIDLLKA QAQVQGELQQ 120 QVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-35	2	105	8	111	LOB family transfactor Ramosa2.1
5ly0_B	8e-35	2	105	8	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	3e-53	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009798305.1	1e-86	PREDICTED: LOB domain-containing protein 24-like
Refseq	XP_016455407.1	1e-86	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	3e-44	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A1S3YTT8	3e-85	A0A1S3YTT8_TOBAC; LOB domain-containing protein 24-like
TrEMBL	A0A1U7YHK4	3e-85	A0A1U7YHK4_NICSY; LOB domain-containing protein 24-like
STRING	XP_009798305.1	4e-86	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5277	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	3e-46	LOB domain-containing protein 24