PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016455551.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 214aa    MW: 24655.5 Da    PI: 4.1245
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016455551.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.17.7e-1914104187
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     f+k+l +sdv++++r+v+pkk ae++    ++k  e++ +t+ d +g  +W+++++y  +++s++yvl+ ++ +Fv+ +gL++gD + ++++++
  XP_016455551.1  14 FDKQLQNSDVSSLRRIVVPKKAAERYlptlEIK--EGFPITMDDMDGiHVWSFRYRYwpNNSSRMYVLE-NTGDFVQTHGLRQGDYFALHYNDQ 104
                     89**************************65544..7788********9*********888899999999.******************998754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100174.73E-2212101No hitNo description
Gene3DG3DSA:2.40.330.101.7E-2412107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-2012106IPR015300DNA-binding pseudobarrel domain
PfamPF023623.1E-1614104IPR003340B3 DNA binding domain
SMARTSM010192.7E-1414116IPR003340B3 DNA binding domain
PROSITE profilePS508639.37514116IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MLQALEPTGF RFLFDKQLQN SDVSSLRRIV VPKKAAERYL PTLEIKEGFP ITMDDMDGIH  60
VWSFRYRYWP NNSSRMYVLE NTGDFVQTHG LRQGDYFALH YNDQKQIYGI EARKAGDGAV  120
FHGYEAEDMI LTDYAQAADD GNGVLMNEPE LDMSSFYFPA MDNEMGMSFI YDTSFWNEPA  180
FDFVGGPMTY YSTNVFPMPS FGSIEDSFSV DDFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A6e-48111172108B3 domain-containing transcription factor FUS3
6j9b_D6e-48111172108B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755141e-116HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016455551.11e-159PREDICTED: B3 domain-containing transcription factor FUS3-like
TrEMBLA0A1S3YTI41e-158A0A1S3YTI4_TOBAC; B3 domain-containing transcription factor FUS3-like
STRINGXP_009800270.11e-156(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80452125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.14e-54B3 family protein