PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016455809.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 227aa    MW: 25086 Da    PI: 5.7404
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016455809.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA38.12.2e-12836735
            GATA  7 tkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    ++TplWR gp  ++ LCnaCG ++r kg+
  XP_016455809.1  8 KDTPLWRPGPPEKPVLCNACGSRWRIKGS 36
                    56********88888**********9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.2E-4150IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-8836IPR013088Zinc finger, NHR/GATA-type
PfamPF003204.3E-10836IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.99E-6937No hitNo description
CDDcd002026.40E-101048No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MPDDTEEKDT PLWRPGPPEK PVLCNACGSR WRIKGSLDDY IPKHANKETQ SFLLAKLPSD  60
VKPLVLAHDN QRLEVGQKVA GTDGSSACSE EKIDDISSSG SPGSFSENCM QMQGTNGEAA  120
KGPLWNPNSV PRRKRSKLKQ YILSPVERLH RQLYHMLQEP EFANTSANEE EILIYQKSKS  180
IPPDEIGNGA MLLISPSTAR EDSKPQFTTA ENNGSCSSNF RNENSSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131139RRKRSKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016455809.11e-169PREDICTED: GATA transcription factor 26-like
TrEMBLA0A1S3YUA61e-168A0A1S3YUA6_TOBAC; GATA transcription factor 26-like
STRINGXP_009626651.11e-147(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125821014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.15e-28GATA transcription factor 26