PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016455978.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 226aa MW: 26529.9 Da PI: 10.2601

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016455978.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176	1.1e-54	11	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++y +k++++++ ++++i +vd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ XP_016455978.1 11 LPPGFRFHPTDEELITYYRVNKISDSTNFTARAIGDVDLNKTEPWDLPAKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNS 105 79**********************9777799***********99999************************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++elvg+kktLvfy+grap+gekt+Wvmheyr+ XP_016455978.1 106 sTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRI 139 78889*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-62	8	161	IPR003441	NAC domain
PROSITE profile	PS51005	60.899	11	161	IPR003441	NAC domain
Pfam	PF02365	3.9E-27	12	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MDQEEVKEET LPPGFRFHPT DEELITYYRV NKISDSTNFT ARAIGDVDLN KTEPWDLPAK 60 AKMGEKEWYF FSLRDRKYPT GVRTNRATNT GYWKTTGKDK EIFNSSTSEL VGMKKTLVFY 120 RGRAPRGEKT NWVMHEYRIH SKSSYRIHKQ DEWVVCRIFQ KSAGGKKYHC NNSRAVNRNP 180 YTLEINNPST MSSQMMQVDH GFQLAMRRSG SRNSRIQQGF SWRFVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	2	167	8	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	2	167	8	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	2	167	8	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	2	167	8	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-55	2	167	11	174	NAC domain-containing protein 19
3swm_B	1e-55	2	167	11	174	NAC domain-containing protein 19
3swm_C	1e-55	2	167	11	174	NAC domain-containing protein 19
3swm_D	1e-55	2	167	11	174	NAC domain-containing protein 19
3swp_A	1e-55	2	167	11	174	NAC domain-containing protein 19
3swp_B	1e-55	2	167	11	174	NAC domain-containing protein 19
3swp_C	1e-55	2	167	11	174	NAC domain-containing protein 19
3swp_D	1e-55	2	167	11	174	NAC domain-containing protein 19
4dul_A	1e-55	2	167	8	171	NAC domain-containing protein 19
4dul_B	1e-55	2	167	8	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016455978.1	1e-172	PREDICTED: NAC domain-containing protein 100-like
Refseq	XP_016455980.1	1e-172	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	4e-80	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1S3YVC8	1e-170	A0A1S3YVC8_TOBAC; NAC domain-containing protein 100-like
STRING	XP_009622905.1	1e-140	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-103	NAC domain containing protein 38

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]