PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016456084.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 237aa MW: 26937.4 Da PI: 9.2435

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016456084.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.5e-13	60	112	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ +hn+ Er+RR+++N +++Lr+l+P+a + ++kKls +++ + +YI +L XP_016456084.1 60 KKLSHNASERNRRKKMNFLYSTLRSLIPPA-NLKKKKLSFPATVSYVQQYIPEL 112 6789***********************6.589999************887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.713	59	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.2E-14	60	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-10	60	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-11	60	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.99E-8	60	117	No hit	No description
SMART	SM00353	8.0E-6	65	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MSSEWSFEEA QNYDQQNNNI LQNEITNDLF EGLPIDHNSP SSYQQQYSKE KSFDNSLMAK 60 KLSHNASERN RRKKMNFLYS TLRSLIPPAN LKKKKLSFPA TVSYVQQYIP ELKKEIERLS 120 QTKDLLLSNK AGSSVQSNNI NQRNTTSSAS ISASPLCNGQ VLVQISTTLT SFPISQVFQT 180 LEEDGILLLN ATSFKSSGEK IFHNLHFQMQ GTVGMEIQSL KTKLLVMYEE NQNRILT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016456084.1	1e-173	PREDICTED: transcription factor ORG2-like
TrEMBL	A0A1S3YVA5	1e-172	A0A1S3YVA5_TOBAC; transcription factor ORG2-like
STRING	XP_009779323.1	1e-161	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2226	22	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	4e-37	bHLH family protein