PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016456281.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 173aa    MW: 18810.8 Da    PI: 10.4559
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016456281.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof116.69.9e-371676262
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                    ++++lkcprCds ntk+Cyynny++sqPr+fCk+CrryW+kGG+ rn+PvGgg+rkn k+s
  XP_016456281.1 16 EQEHLKCPRCDSPNTKLCYYNNYNISQPRHFCKSCRRYWAKGGTPRNIPVGGGSRKNTKRS 76
                    57899****************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-25968IPR003851Zinc finger, Dof-type
PfamPF027011.1E-291874IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.4842074IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MQDPSIYTQI KPQFPEQEHL KCPRCDSPNT KLCYYNNYNI SQPRHFCKSC RRYWAKGGTP  60
RNIPVGGGSR KNTKRSSSSN KKISSSTTSS SVSSSVPALN RSRVIGMTNG QFSSLLESNG  120
PQFGTLLEAL NTNNNGSNLH LGEFARIQNT NLGSGSGSNG IRQNGSNTNG YLG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016456281.11e-123PREDICTED: dof zinc finger protein DOF3.1-like
SwissprotO821553e-40DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLA0A1S3YVF11e-122A0A1S3YVF1_TOBAC; dof zinc finger protein DOF3.1-like
STRINGXP_009615092.15e-77(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.17e-35DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]