PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016456410.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 314aa    MW: 35047.8 Da    PI: 7.3069
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016456410.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.7e-14111162155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  XP_016456410.1 111 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 162
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.0E-13109164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-16109177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-12109166No hitNo description
PROSITE profilePS5088815.294110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-11111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-10116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MALEALSSNE LLNFIIYDTI SATPFTSNNL DPSSSENAAS GTLLLDHENG LLTLPQHFCG  60
HEQQYSTASV PETTTTTTRR EKNLAVAQGG GRKKRRRRPK VCKNKEEAEN QRMTHIAVER  120
NRRKQMNEHL AVLRSLMPES YVQRGDQASI VGGAIEFVKE LEHILQSLEA QKFLLLQQGG  180
GDGEVPSEKY FPTPFAQFFS YPQYTCSQLP NKYTSKSKAA IADIEVTLIE THANVRILSR  240
RRFRQLSKLV AAFQSLYLSV LHLNVTTLDP LVLYSISAKV EEGCQLNSAD DIAGAVHHML  300
RIIEEEAVTL SCQA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19197RKKRRRR
29297KKRRRR
3111122RMTHIAVERNRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2612331e-104GQ261233.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI018 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016456410.10.0PREDICTED: transcription factor bHLH71-like
SwissprotQ56XR02e-78BH071_ARATH; Transcription factor bHLH71
TrEMBLA0A1S3YWI70.0A0A1S3YWI7_TOBAC; transcription factor bHLH71-like
STRINGXP_009763212.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56322436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.11e-79beta HLH protein 71
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]