PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016456660.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ZF-HD

Protein Properties

Length: 226aa MW: 25699.7 Da PI: 6.901

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016456660.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	104.5	6.8e-33	52	106	5	60
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 rY+eClkNhA+ +Gg+avDGCgEf+ps geegt +alkCaAC+CHRnFHR+eve e XP_016456660.1 52 RYRECLKNHAVGIGGQAVDGCGEFLPS-GEEGTLDALKCAACNCHRNFHRKEVEGE 106 8***********************9.999*******************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-22	35	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	8.5E-30	52	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.7E-30	52	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.26	53	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	6.57E-18	154	224	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.8E-29	155	225	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.7E-22	163	220	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MEFDEEHEDQ EEEIANIPQI PTTENNYQEL GEGGPISQAA ATLRKNNVPI PRYRECLKNH 60 AVGIGGQAVD GCGEFLPSGE EGTLDALKCA ACNCHRNFHR KEVEGEILNF HHPTPPPPIL 120 HHPPHHYPYR YHQRPLALPS ISSREDIEEY VSNPSSSGGS GSRKRFRTKF TQDQKEKMFA 180 FAEGLGWRIQ KENEAAVQQF CAETNIRRQV FKVWMRNNKN TLGKKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-25	164	221	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016456660.1	1e-170	PREDICTED: zinc-finger homeodomain protein 2-like
Swissprot	Q9SB61	2e-69	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A1S3YX48	1e-169	A0A1S3YX48_TOBAC; zinc-finger homeodomain protein 2-like
STRING	XP_009624224.1	1e-169	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA518	24	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	1e-62	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]