PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016457346.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WOX

Protein Properties

Length: 220aa MW: 24648.4 Da PI: 5.6724

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016457346.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.6	6.9e-21	91	151	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++ +l +++e++V++WFqNrRa+ k+ XP_016457346.1 91 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKDITFELsqhgQISETNVYNWFQNRRARSKR 151 89***************99************************************97 PP
2	Wus_type_Homeobox	101.1	8.2e-33	91	153	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G tP+k++i++it eL+++G+i+++NV++WFQNr+aR+++kq XP_016457346.1 91 RQRWTPTPVQLQILERIFDQGNGTPSKQKIKDITFELSQHGQISETNVYNWFQNRRARSKRKQ 153 79***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.576	87	152	IPR001356	Homeobox domain
SMART	SM00389	6.6E-14	89	156	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.3E-17	89	154	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.01E-18	89	154	IPR009057	Homeodomain-like
Pfam	PF00046	1.0E-18	91	151	IPR001356	Homeobox domain
CDD	cd00086	3.31E-12	91	153	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MEWENQQQQP PQRAEDMNGA AGGGGGMFVK VMTDEQMEVL RKQIAVYAVI CEQLVDLHKS 60 MASQHDLAGT RLGNLYCDPL ITSAGHRISG RQRWTPTPVQ LQILERIFDQ GNGTPSKQKI 120 KDITFELSQH GQISETNVYN WFQNRRARSK RKQQGGGATN NVESEVETEV ESPNEKKTKP 180 EDLQSSHMPT SRTEEGSSNP TGSFDQLSFY AMSNPSLEMC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	152	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009597869.1	1e-166	PREDICTED: WUSCHEL-related homeobox 13-like isoform X2
Refseq	XP_016457346.1	1e-166	PREDICTED: WUSCHEL-related homeobox 13-like isoform X2
Swissprot	O81788	3e-76	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A1S3YYC6	1e-165	A0A1S3YYC6_TOBAC; WUSCHEL-related homeobox 13-like isoform X2
STRING	XP_009597868.1	1e-161	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-74	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]