PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016457481.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 25938.7 Da    PI: 5.858
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016457481.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF831.9e-26959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k ien+  rqvtfskRr+g++KKA+EL +LCdaev v++fs+tgkly ++s
  XP_016457481.1  9 KMIENTNSRQVTFSKRRQGLMKKAKELAILCDAEVGVLVFSNTGKLYQFAS 59
                    68***********************************************86 PP
2K-box64.15e-228517312100
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     a + ++q e++ L++e+  L++ q +l+G++Le L++k+LqqLe+qL +++  +++kK+++ll +ie++  +ek+++ en+aLr+++ee
  XP_016457481.1  85 AAEHESQPEVNELRAEVALLRQVQSRLMGKELEGLNFKDLQQLEHQLSEGILAVKDKKEQVLLGKIEKSLLQEKKVSLENEALREQIEE 173
                     33456899******************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.455161IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-40160IPR002100Transcription factor, MADS-box
CDDcd002651.26E-41277No hitNo description
SuperFamilySSF554551.09E-32280IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.1E-261157IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-273859IPR002100Transcription factor, MADS-box
PfamPF014868.9E-1686171IPR002487Transcription factor, K-box
PROSITE profilePS5129712.26687177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGRGKIEIKM IENTNSRQVT FSKRRQGLMK KAKELAILCD AEVGVLVFSN TGKLYQFASS  60
SMENILSRYN KAPESSELTT IENVAAEHES QPEVNELRAE VALLRQVQSR LMGKELEGLN  120
FKDLQQLEHQ LSEGILAVKD KKEQVLLGKI EKSLLQEKKV SLENEALREQ IEELRRSSRH  180
CQERALGLEN SVCDSDTCLR LGLPVNTSQN MIIPKMESTS NDAQNPLVLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-21185185MEF2C
5f28_B2e-21185185MEF2C
5f28_C2e-21185185MEF2C
5f28_D2e-21185185MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016457481.11e-166PREDICTED: MADS-box transcription factor 23-like
SwissprotQ9M2K81e-53AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A1S3YYR41e-164A0A1S3YYR4_TOBAC; MADS-box transcription factor 23-like
STRINGXP_009612621.11e-162(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.15e-56AGAMOUS-like 18