PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016457719.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 375aa    MW: 42097.4 Da    PI: 7.5589
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016457719.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.31.1e-1452111155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +  Aa a++ a++k++g
  XP_016457719.1  52 SIYRGVTRHRWTGRYEAHLWDkNCWNEtqnKKgRQVYLGAYDDEAAAAHAYDLAALKYWG 111
                     57*******************999966656446**********99*************98 PP
2AP251.13.3e-16154205155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  XP_016457719.1 154 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 205
                     89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-1152111IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-1652121IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-1553120IPR001471AP2/ERF domain
SMARTSM003801.6E-2553125IPR001471AP2/ERF domain
PROSITE profilePS5103219.69153119IPR001471AP2/ERF domain
PRINTSPR003674.4E-65465IPR001471AP2/ERF domain
CDDcd000181.49E-23154215No hitNo description
SuperFamilySSF541711.11E-17154215IPR016177DNA-binding domain
PfamPF008476.0E-12154205IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17155214IPR001471AP2/ERF domain
SMARTSM003801.2E-24155219IPR001471AP2/ERF domain
PROSITE profilePS5103218.334155213IPR001471AP2/ERF domain
PRINTSPR003674.4E-6195215IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MAKTSKSNQK NGTTTTAATT SSSSNKSDGN AIGKAKRTRK SVPRDSPPQR SSIYRGVTRH  60
RWTGRYEAHL WDKNCWNETQ NKKGRQVYLG AYDDEAAAAH AYDLAALKYW GQDTILNFPV  120
STYEKELKEM EAQSKEEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY  180
LYLGTYATQE EAATAYDMAA IEYRGLNAVT NFDLSRYIKW LRPSNQTNNI TTINNPSDNT  240
EPNPNPNADD IHSMPNTKEE MEFSFLQQQQ QQQQTSNSDA TAVALPCPAV GATASSALGL  300
LLQSSKFKEM LERTSAANCP ETPPEPDRPR RSFPDDIQTY FDCQESSSFI EEHDVIFGDL  360
GSFASPNMFQ CELDS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016457719.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-124AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1S3YZU80.0A0A1S3YZU8_TOBAC; AP2-like ethylene-responsive transcription factor At1g16060
STRINGXP_009615687.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.23e-94AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]