PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016458345.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 251aa    MW: 28630 Da    PI: 5.1165
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016458345.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.33e-21105155155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +grW+AeIrdp+    r kr++lg+++t+eeAa  +++a+ kl+g
  XP_016458345.1 105 KKFRGVRQRP-WGRWAAEIRDPT----RgKRVWLGTYDTPEEAATVYDEAAVKLKG 155
                     59********.**********84....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381233.8E-9010251IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000183.39E-33105163No hitNo description
Gene3DG3DSA:3.30.730.106.1E-31106164IPR001471AP2/ERF domain
SMARTSM003804.4E-38106169IPR001471AP2/ERF domain
PfamPF008475.8E-14106155IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22106163IPR016177DNA-binding domain
PROSITE profilePS5103224.302106163IPR001471AP2/ERF domain
PRINTSPR003677.9E-10107118IPR001471AP2/ERF domain
PRINTSPR003677.9E-10129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MIRNPVISPM DVPKTVKFSQ HIVTKNKHVP EQNEKSNFHS KFSQRVVRII LTDADATDSS  60
DDEGQDTVRR VRRHVTEINF MPSPNLICEK KRRLVSPDTD VTRRKKFRGV RQRPWGRWAA  120
EIRDPTRGKR VWLGTYDTPE EAATVYDEAA VKLKGPDAVT NFPKVLTADV TETESVTDGG  180
EKGENDVALS PTSVLRNDYF TPLDDLGFCE VNAFGFDVDS LFRLPEFGMS EKYYGEEFGE  240
FDFDDFALEA R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-20105163463ATERF1
3gcc_A8e-20105163463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
190105KRRLVSPDTDVTRRKK
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0588270.0AF058827.1 Nicotiana tabacum TSI1 (Tsi1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016458345.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046821e-116PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A1S3Z1R40.0A0A1S3Z1R4_TOBAC; pathogenesis-related genes transcriptional activator PTI6-like
STRINGXP_009798127.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-32cytokinin response factor 4