PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016458603.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 500aa    MW: 55514.9 Da    PI: 6.2714
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016458603.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM90.82.4e-284016110129
             NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskkgelvg 101
                      deel+ +yL kk+ +++++   +++evd++ ++P++L  +++ ++ k+wyf s++++ky++g ++n   a ++gyW+  g+d  +++ +g+l+g
  XP_016458603.1  40 ADEELIIHYLDKKMMDQPFPN-YTVHEVDVFLYHPQKLSqMHHPSQAKKWYFLSPASNKYTEGGQSNGvsANNDGYWEPCGTDSLIHK-DGKLIG 132
                     59****************999.67**************8446666888**************999998545679***********999.99**** PP

             NAM 102 lkktLvfykgr.apkgektdWvmheyrle 129
                      +ktL +  g+ +++ ++t+W+mheyrle
  XP_016458603.1 133 YRKTLNYIAGKlDKDRKRTEWLMHEYRLE 161
                     ********9862455679*********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.59431182IPR003441NAC domain
PfamPF023653.4E-1540160IPR003441NAC domain
SuperFamilySSF1019419.68E-3341182IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MEGKGKQDST ANVTNVNKNC ADIGVIPKQE VLVDDQLSGA DEELIIHYLD KKMMDQPFPN  60
YTVHEVDVFL YHPQKLSQMH HPSQAKKWYF LSPASNKYTE GGQSNGVSAN NDGYWEPCGT  120
DSLIHKDGKL IGYRKTLNYI AGKLDKDRKR TEWLMHEYRL EGSRDVPTSD DMQRVFCKLF  180
KSNNKLMAAE EKEATKFAAP NDGVSGADPT IQGPENANDI TNDKGPSNGH SRDLLPMPDT  240
DQDTTMPTPT PQHVQGTTLT RTGRQKATNN VVRNKRPRRK RDSHPPPASH QGLMMPHLPN  300
ANSQPQRDQG IRLPPPLPQN DERKTLPIST GPYKANNGVV VTDNGPSNSL VVPCCPEHIL  360
DEPSFDWTVA NSWLQDGTVL PSRPQHGQQT ILPSLTGNNT NADEVSVIGL TLNHLRDAQD  420
LPSSVQLPKL PSVQASPRGS HENEAAVAPR YDGWPLHTAE TRLPPFDGPF ESLTEEELAF  480
FDKPDPGYPE AFENKKEAKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-204118427167NO APICAL MERISTEM PROTEIN
1ut4_B4e-204118427167NO APICAL MERISTEM PROTEIN
1ut7_A4e-204118427167NO APICAL MERISTEM PROTEIN
1ut7_B4e-204118427167NO APICAL MERISTEM PROTEIN
4dul_A4e-204118427167NAC domain-containing protein 19
4dul_B4e-204118427167NAC domain-containing protein 19
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275279RPRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016458603.10.0PREDICTED: uncharacterized protein LOC107782254 isoform X1
RefseqXP_016458604.10.0PREDICTED: uncharacterized protein LOC107782254 isoform X1
TrEMBLA0A1S3Z2F10.0A0A1S3Z2F1_TOBAC; uncharacterized protein LOC107782254 isoform X1
STRINGXP_009607149.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1503569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.23e-24NAC family protein