PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016458605.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 395aa MW: 43967.1 Da PI: 7.0296

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016458605.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	91.4	1.5e-28	40	161	10	129
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskkgelvg 101 deel+ +yL kk+ +++++ +++evd++ ++P++L +++ ++ k+wyf s++++ky++g ++n a ++gyW+ g+d +++ +g+l+g XP_016458605.1 40 ADEELIIHYLDKKMMDQPFPN-YTVHEVDVFLYHPQKLSqMHHPSQAKKWYFLSPASNKYTEGGQSNGvsANNDGYWEPCGTDSLIHK-DGKLIG 132 59**************999.67**********8446666888**********999998545679*******999.99 PP NAM 102 lkktLvfykgr.apkgektdWvmheyrle 129 +ktL + g+ +++ ++t+W+mheyrle XP_016458605.1 133 YRKTLNYIAGKlDKDRKRTEWLMHEYRLE 161 ****9862455679*******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	34.594	31	182	IPR003441	NAC domain
Pfam	PF02365	2.1E-15	40	160	IPR003441	NAC domain
SuperFamily	SSF101941	6.02E-33	41	182	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MEGKGKQDST ANVTNVNKNC ADIGVIPKQE VLVDDQLSGA DEELIIHYLD KKMMDQPFPN 60 YTVHEVDVFL YHPQKLSQMH HPSQAKKWYF LSPASNKYTE GGQSNGVSAN NDGYWEPCGT 120 DSLIHKDGKL IGYRKTLNYI AGKLDKDRKR TEWLMHEYRL EGSRDVPTSD DMQRVFCKLF 180 KSNNKLMAAE EKEATKFAAP NDGVSGADPT IQGPENANDI TNDKGPSNGH SRDLLPMPDT 240 DQDTTMPTPT PQHVQGTTLT RTGRQKATNN VVRNKRPRRK RDSHPPPASH QGLMMPHLPN 300 ANSQPQRDQG IRLPPPLPQN DERKTLPIST GPYKANNGVV VTDNGPSNSL VVPCCPEHIL 360 DEPSFDWTVA NSWLQDGTVL PSRPQHGSSF FCSTP

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MEGKGKQDST ANVTNVNKNC ADIGVIPKQE VLVDDQLSGA DEELIIHYLD KKMMDQPFPN  60
YTVHEVDVFL YHPQKLSQMH HPSQAKKWYF LSPASNKYTE GGQSNGVSAN NDGYWEPCGT  120
DSLIHKDGKL IGYRKTLNYI AGKLDKDRKR TEWLMHEYRL EGSRDVPTSD DMQRVFCKLF  180
KSNNKLMAAE EKEATKFAAP NDGVSGADPT IQGPENANDI TNDKGPSNGH SRDLLPMPDT  240
DQDTTMPTPT PQHVQGTTLT RTGRQKATNN VVRNKRPRRK RDSHPPPASH QGLMMPHLPN  300
ANSQPQRDQG IRLPPPLPQN DERKTLPIST GPYKANNGVV VTDNGPSNSL VVPCCPEHIL  360
DEPSFDWTVA NSWLQDGTVL PSRPQHGSSF FCSTP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-20	41	184	27	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-20	41	184	27	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-20	41	184	27	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-20	41	184	27	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-20	41	184	30	170	NAC domain-containing protein 19
3swm_B	2e-20	41	184	30	170	NAC domain-containing protein 19
3swm_C	2e-20	41	184	30	170	NAC domain-containing protein 19
3swm_D	2e-20	41	184	30	170	NAC domain-containing protein 19
3swp_A	2e-20	41	184	30	170	NAC domain-containing protein 19
3swp_B	2e-20	41	184	30	170	NAC domain-containing protein 19
3swp_C	2e-20	41	184	30	170	NAC domain-containing protein 19
3swp_D	2e-20	41	184	30	170	NAC domain-containing protein 19
4dul_A	2e-20	41	184	27	167	NAC domain-containing protein 19
4dul_B	2e-20	41	184	27	167	NAC domain-containing protein 19

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	275	279	RPRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016458605.1	0.0	PREDICTED: uncharacterized protein LOC107782254 isoform X2
TrEMBL	A0A1S3Z2F2	0.0	A0A1S3Z2F2_TOBAC; uncharacterized protein LOC107782254 isoform X2
STRING	XP_009607149.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	2e-24	NAC family protein