PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016458645.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 440aa    MW: 50336.9 Da    PI: 5.1047
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016458645.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM139.71.8e-43591822128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                     ppG+rF+Ptd+elv++yLk+k+++ +l   + i e++iyk++P+ +   + +eekewy  ++rd+ky++g+r+nra+ +gyWkatg dk+++++k
  XP_016458645.1  59 PPGYRFNPTDSELVTYYLKRKLDNLPLYP-NRIYEINIYKYNPELIA-GI-TEEKEWYVLTPRDRKYRNGNRPNRAAGDGYWKATGADKQIKDNK 150
                     9*************************888.67************997.44.4689**************************************99 PP

             NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                     +  +glkk+Lv+y g+ pkgekt+W+mheyr+
  XP_016458645.1 151 NVIIGLKKSLVYYIGKPPKGEKTNWIMHEYRV 182
                     99****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-5354209IPR003441NAC domain
PROSITE profilePS5100551.77158209IPR003441NAC domain
PfamPF023655.4E-2559182IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MENHHSSSPP TNNANISKGN LTDQMPINEL QVIAVLSNNN KNGEITSAEE IDAYINNFPP  60
GYRFNPTDSE LVTYYLKRKL DNLPLYPNRI YEINIYKYNP ELIAGITEEK EWYVLTPRDR  120
KYRNGNRPNR AAGDGYWKAT GADKQIKDNK NVIIGLKKSL VYYIGKPPKG EKTNWIMHEY  180
RVPDIPNLAE RDINDWKLDE WVLCRIYKKS DRDNTMFTQR KRIRDAYETK TGRGNSNDSV  240
QEFNDDGQIG ESSDGNLSNE FANITFEATS QDSTRHDSIN CIQDTLHSNN HVPTFHPQVP  300
TRFGNFTQSC VPEFCDMPWS TTNAYDYQSI VTNDKFHYPP SPMKIEPISS MMANNNFMGQ  360
DDNMKSKGFG DIPCFSSCIG GYIGQDYEYM GLEKMGSGEF IDQYLVNCEM VNSTMYLPEY  420
NMKNLVNGES SSQSNTISGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-485720916165NO APICAL MERISTEM PROTEIN
1ut4_B1e-485720916165NO APICAL MERISTEM PROTEIN
1ut7_A1e-485720916165NO APICAL MERISTEM PROTEIN
1ut7_B1e-485720916165NO APICAL MERISTEM PROTEIN
4dul_A1e-485720916165NAC domain-containing protein 19
4dul_B1e-485720916165NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016458645.10.0PREDICTED: NAC domain-containing protein 102-like
TrEMBLA0A1S3Z2J10.0A0A1S3Z2J1_TOBAC; NAC domain-containing protein 102-like
STRINGXP_009793862.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139361213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.12e-55NAC family protein