PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016458704.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

S1Fa-like

Protein Properties

Length: 85aa MW: 9401.18 Da PI: 10.3894

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016458704.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	131.9	1.7e-41	18	85	3	70
S1FA 3 vakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 ++ve++G+nPGlivl+vvgglll flvgny+ly+yaqk+lPP+kkkPvskkklkre+lkqGv++PGe XP_016458704.1 18 AKNVEVQGFNPGLIVLIVVGGLLLAFLVGNYLLYMYAQKTLPPKKKKPVSKKKLKRERLKQGVSAPGE 85 5689***************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	1.2E-39	21	85	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence Send to blast
MDYEGDPPPS FDPMKNTAKN VEVQGFNPGL IVLIVVGGLL LAFLVGNYLL YMYAQKTLPP 60 KKKKPVSKKK LKRERLKQGV SAPGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	5e-54	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009767587.1	2e-54	PREDICTED: DNA-binding protein S1FA-like
Refseq	XP_016458704.1	2e-54	PREDICTED: DNA-binding protein S1FA-like
Swissprot	Q7XLX6	2e-15	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	A0A1S3Z2P8	4e-53	A0A1S3Z2P8_TOBAC; DNA-binding protein S1FA-like
TrEMBL	A0A1U7VHN2	4e-53	A0A1U7VHN2_NICSY; DNA-binding protein S1FA-like
STRING	XP_009767587.1	7e-54	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3174	22	49

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]