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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_016458928.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | WRKY | ||||||||
| Protein Properties | Length: 514aa MW: 56183 Da PI: 7.9243 | ||||||||
| Description | WRKY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | WRKY | 97.2 | 1.1e-30 | 266 | 324 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
XP_016458928.1 266 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGTHNHP 324
7*********************************************************7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.20.25.80 | 1.8E-33 | 250 | 326 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 6.28E-28 | 258 | 326 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 29.562 | 260 | 326 | IPR003657 | WRKY domain |
| SMART | SM00774 | 1.8E-36 | 265 | 325 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 1.2E-26 | 267 | 324 | IPR003657 | WRKY domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0010200 | Biological Process | response to chitin | ||||
| GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
| GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 514 aa Download sequence Send to blast |
MDKGWGLTLE SSSDKVGFFK NKPFFGFNLS PRLNNIKGGE MFSGAEFPAD EKRPGMVNEV 60 DFFSEKKSIH DVVVKKENSQ GNNTMRTDLF VHLAQLQVEL ERMNTENQRL KGMLTQVTNS 120 YSALQMHLVT LMQQQQQLIS RTESPHNHEV VEVKSEEKNQ EKDGDIVPRQ FMELGPSSAK 180 ADPVDEPSQS HSTSEERTHS GSPRNNMEMS RDKAIGREES PESESWVPNK VPKLMNSSKP 240 VEQTTEATMR KARVSVRARS EAPMISDGCQ WRKYGQKMAK GNPCPRAYYR CTMAVGCPVR 300 KQVQRCAEDR TILITTYEGT HNHPLPPAAM AMASTTSAAA NMLLSGSMPS ADGLMNTNFL 360 ARTILPCSSN MATISASAPF PTVTLDLTQN PNAMSNYHQR NPATQFQVPL PAGLNHPNFV 420 GSMSAPQMPQ VLGQALYNQS RFSGLQVSQD NIHHPSFSDT LSAATAAITA DPNFTAALAA 480 AISSIIGGSH PNNGNNPTSG PTSNSNKTSS FSGN |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 2ayd_A | 5e-22 | 252 | 328 | 1 | 76 | WRKY transcription factor 1 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. | |||||
| Binding Motif ? help Back to Top | |||
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| Motif ID | Method | Source | Motif file |
| MP00209 | DAP | Transfer from AT1G62300 | Download |
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| Regulation -- Description ? help Back to Top | ||||||
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| Source | Description | |||||
| UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016458928.1 | 0.0 | PREDICTED: WRKY transcription factor 6-like isoform X3 | ||||
| Swissprot | Q9C519 | 1e-141 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
| TrEMBL | A0A1S3Z3I5 | 0.0 | A0A1S3Z3I5_TOBAC; WRKY transcription factor 6-like isoform X3 | ||||
| STRING | XP_009776375.1 | 0.0 | (Nicotiana sylvestris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G62300.1 | 1e-119 | WRKY family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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