PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016459189.1

Common Name

WRKY4

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 227aa MW: 26197.4 Da PI: 8.1367

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016459189.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	78.3	8.8e-25	116	177	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYGqK++ ++++pr+Y+rCt + gC++ k+v+r +e+p ++ +tY g+H+++ XP_016459189.1 116 VDDGHAWRKYGQKHILNAKYPRNYFRCTNKfdqGCEANKQVQRIQENPPLFRVTYYGHHTCK 177 59************************99999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-26	102	177	IPR003657	WRKY domain
PROSITE profile	PS50811	20.518	111	174	IPR003657	WRKY domain
SuperFamily	SSF118290	4.97E-25	112	178	IPR003657	WRKY domain
SMART	SM00774	1.3E-37	116	178	IPR003657	WRKY domain
Pfam	PF03106	1.5E-24	117	177	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MEPENYTQSR LEKVAEKLNR GRELTRRLRE MIKKPEARAG DGSVILTEEL VGKIMSSFSE 60 TLSILRSNEC SEVSQILKST EDSSGSCKTS SLKDRRGHYK RRKTLETTIN ETSTLVDDGH 120 AWRKYGQKHI LNAKYPRNYF RCTNKFDQGC EANKQVQRIQ ENPPLFRVTY YGHHTCKTFP 180 KVSQMICDSP TDEDSSVLLN FNSTSNHHHF LDLMEGTVDF VDLSFEF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	1e-22	116	177	8	69	OsWRKY45
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF193771	0.0	AF193771.1 Nicotiana tabacum DNA-binding protein 4 (WRKY4) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016459189.1	1e-171	PREDICTED: probable WRKY transcription factor 70
TrEMBL	Q9M6E0	1e-170	Q9M6E0_TOBAC; DNA-binding protein 4 (Fragment)
STRING	XP_009760864.1	1e-170	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4230	21	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	1e-40	WRKY DNA-binding protein 70

Link Out ? help Back to Top
Entrez Gene	107782765

Publications ? help Back to Top
Chen C,Chen Z Isolation and characterization of two pathogen- and salicylic acid-induced genes encoding WRKY DNA-binding proteins from tobacco. Plant Mol. Biol., 2000. 42(2): p. 387-96 [PMID:10794538]