PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016459223.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 526aa    MW: 59091.4 Da    PI: 8.7513
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016459223.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-09410458348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT +E  +lv++v+++G g+W+ I r        Rt  ++k++w+++l
   XP_016459223.1 410 PWTIDEVVKLVEGVARYGAGRWSEIKRLAFascPYRTSVDLKDKWRNLL 458
                      8****************************999*9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.269403462IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-14404461IPR009057Homeodomain-like
SuperFamilySSF466891.87E-16405463IPR009057Homeodomain-like
SMARTSM007172.0E-8407460IPR001005SANT/Myb domain
CDDcd116603.20E-18409459No hitNo description
PfamPF002493.1E-7410458IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MKTLKLLQKS QMRQSTKCLT WKKWELLKRY VTVHGSAPCS ELSNIDLSGR TEISFNSEDA  60
LNEDTPSTSA SSSWKPDFSK LEGKICLDNL TVKELQETFK ATFGRETSVK DKQWLKRRIT  120
MGLTNSCDFS CTTFIIRDNL VVRKGEEQIS HPVKVRISAD PEVGVANSDS GGSLGDRDNR  180
VNDDANFSGT DVPSSAFESC NVTKDLYAEQ GTAKRVRKPT KRYIEELSEI EETSEKLPSS  240
DKVSRYRFPC TESLMRPTTN VRSNARPLFT RQDSLGGSGV QIPFVSRIRR SRPRENFTSL  300
LKLQPSDMDM ATRQVRSVFD ASGPQEDDKR NNDLIKTSST PGWTKQPLIA ACEKDEHYSG  360
MRIVELENDM NEDNSDDNVE LNDGFEDNSD DNVISVPTPK GGMRRKHHRP WTIDEVVKLV  420
EGVARYGAGR WSEIKRLAFA SCPYRTSVDL KDKWRNLLKA SFVQLPAEKG MLNSRKQASV  480
PIPAPILSRV RELADMQGQF QPILSTGKSS GHSSGRSVHE ARSGYL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016459223.10.0PREDICTED: uncharacterized protein LOC107782799 isoform X3
TrEMBLA0A1S3Z4A10.0A0A1S3Z4A1_TOBAC; uncharacterized protein LOC107782799 isoform X3
STRINGXP_009602392.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.28e-85TRF-like 6