PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016459247.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 137aa MW: 15232.2 Da PI: 4.4691

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016459247.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00091	108	122	2	16
EETTTTEEESSHHHH CS zf-C2H2 2 kCpdCgksFsrksnL 16 +C++C+k+Fs +++L XP_016459247.1 108 TCEICNKVFSPNYTL 122 7********998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51292	22.477	59	119	IPR011016	Zinc finger, RING-CH-type
Gene3D	G3DSA:3.30.40.10	6.4E-19	65	116	IPR013083	Zinc finger, RING/FYVE/PHD-type
SuperFamily	SSF57850	6.1E-16	65	116	No hit	No description
SMART	SM00744	3.7E-21	66	113	IPR011016	Zinc finger, RING-CH-type
Pfam	PF12906	1.6E-13	67	112	IPR011016	Zinc finger, RING-CH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MVDEFMVCVD RIIIATTCFG ESESVVNGRE ISLLTNNDVA NLSVENNSRE MTSGGEGCSK 60 GSVIRECRIC QEEDEENDME APCACNGTLK FAHRKCIQRW CNKKGDITCE ICNKVFSPNY 120 TLPPARSNPD VMAIDIR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009776076.1	2e-97	PREDICTED: uncharacterized protein LOC104225893
TrEMBL	A0A1U7WFQ0	5e-96	A0A1U7WFQ0_NICSY; uncharacterized protein LOC104225893
STRING	XP_009776076.1	9e-97	(Nicotiana sylvestris)