PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016459421.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 145aa MW: 16391.1 Da PI: 9.0594

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016459421.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	44.6	2.5e-14	82	134	3	55
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 k+ t+ + +++L e F++n+yp++++ e+L k+lgLt qV+ WF N R + XP_016459421.1 82 KKKTYREGAIKRLYESFKENQYPDRDANEKLGKELGLTAHQVSKWFENARHCH 134 567888999****************************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	13.248	77	137	IPR001356	Homeobox domain
SMART	SM00389	6.7E-10	80	141	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.7E-13	80	141	IPR009057	Homeodomain-like
CDD	cd00086	1.56E-10	82	138	No hit	No description
Pfam	PF00046	7.7E-12	82	135	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-13	82	131	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MKETYGNESS DSSDEDFEGG PSPKEREIRS AKATMTSPSS TLVDTKYQSG KQKGSRHASD 60 RGLCEKLKIG GMDTSELHSS GKKKTYREGA IKRLYESFKE NQYPDRDANE KLGKELGLTA 120 HQVSKWFENA RHCHRHSSRW DSIMS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016459421.1	1e-104	PREDICTED: pathogenesis-related homeodomain protein-like isoform X1
TrEMBL	A0A1S3Z4V1	1e-103	A0A1S3Z4V1_TOBAC; pathogenesis-related homeodomain protein-like isoform X1
STRING	XP_009592467.1	3e-86	(Nicotiana tomentosiformis)
STRING	XP_009602398.1	6e-91	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA24167	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	2e-09	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain