PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016459422.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 139aa    MW: 15633.2 Da    PI: 6.8019
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016459422.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-0782122343
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterq 43 
                     k+ t+ +  +++L e F++n+yp++++ e+L k+lgLt  q
  XP_016459422.1  82 KKKTYREGAIKRLYESFKENQYPDRDANEKLGKELGLTAHQ 122
                     567888999****************************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-580122IPR009057Homeodomain-like
PfamPF000463.9E-582122IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.4E-782122IPR009057Homeodomain-like
CDDcd000864.69E-582122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MKETYGNESS DSSDEDFEGG PSPKEREIRS AKATMTSPSS TLVDTKYQSG KQKGSRHASD  60
RGLCEKLKIG GMDTSELHSS GKKKTYREGA IKRLYESFKE NQYPDRDANE KLGKELGLTA  120
HQRQFDQEGY VVLIQVIYE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016459422.11e-98PREDICTED: pathogenesis-related homeodomain protein-like isoform X2
TrEMBLA0A1S3Z5D42e-97A0A1S3Z5D4_TOBAC; pathogenesis-related homeodomain protein-like isoform X2
STRINGXP_009592467.11e-66(Nicotiana tomentosiformis)
STRINGXP_009599310.13e-71(Nicotiana tomentosiformis)
STRINGXP_009602398.13e-71(Nicotiana tomentosiformis)