PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016459462.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 217aa MW: 24615.2 Da PI: 9.6549

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016459462.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.1	8e-28	76	130	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+ Wt++LHe+F e+v++LGG++kAtPk+il+lm+ L+++++kSHLQkYR+ XP_016459462.1 76 KRRITWTQDLHEQFCECVNRLGGAKKATPKAILKLMNCYELSISNIKSHLQKYRV 130 689***************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.66E-15	73	130	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.9E-25	74	131	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-21	76	130	IPR006447	Myb domain, plants
Pfam	PF00249	9.9E-8	80	129	IPR001005	SANT/Myb domain
Pfam	PF14379	4.4E-16	163	209	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MWQQNKSALT GAKTLRDPYL SMAARGSQVG KDSFKSRIIK PCCVCQLEKK PQSPPNESVC 60 ISSSNVTPER AETTKKRRIT WTQDLHEQFC ECVNRLGGAK KATPKAILKL MNCYELSISN 120 IKSHLQKYRV TCDVTISPKD AVLTEGSPHR SSFPAHGPET YPQILEALKL QISVQQSLYE 180 QLEIQRSLQL RIEEQAKQLR AMFDRQAETN KHFQHSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-15	76	129	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-15	76	129	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-15	76	129	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-15	76	129	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-15	76	129	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-15	76	129	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-15	76	129	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-15	76	129	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016459458.1	1e-161	PREDICTED: uncharacterized protein LOC107783015 isoform X2
Refseq	XP_016459460.1	1e-162	PREDICTED: myb family transcription factor APL-like isoform X4
Refseq	XP_016459461.1	1e-162	PREDICTED: myb family transcription factor APL-like isoform X4
Refseq	XP_016459462.1	1e-162	PREDICTED: protein PHR1-LIKE 1-like isoform X5
Swissprot	Q0WVU3	2e-35	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A1S3Z4Y3	1e-160	A0A1S3Z4Y3_TOBAC; uncharacterized protein LOC107783015 isoform X2
TrEMBL	A0A1S3Z4Z5	1e-160	A0A1S3Z4Z5_TOBAC; myb family transcription factor APL-like isoform X4
TrEMBL	A0A1S3Z5H7	1e-161	A0A1S3Z5H7_TOBAC; protein PHR1-LIKE 1-like isoform X5
STRING	XP_009595777.1	1e-158	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	7e-38	G2-like family protein