PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016459664.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 232aa    MW: 26360 Da    PI: 8.2044
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016459664.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.91.1e-072262650
                    HHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF 26 ELSvLCdaevaviifsstgklyeys 50
                    ELS+ Cd++++ i++ ++g++++++
  XP_016459664.1  2 ELSTFCDIKACTIVINPQGEIQTWP 26
                    9***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.57E-5146IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MELSTFCDIK ACTIVINPQG EIQTWPENLE AVKVVLNMYS NYKPQQKGMG KDAVMRPSSG  60
KEGTSASVPK PAKDNKRKRD SASEDLDLKT RMTRKPRKNT IPLTKEYVRR LRDEDEEEEN  120
NHGSILALAL HQKERNALKL ISGQKEQEII DPRAELTKAH QDQTDLIEKV MKILKAPGLD  180
SGTMANISIS QLQQKIERIE QFREEVDQIK AESLGWKEGM DRFAAEKETA RA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016459664.11e-172PREDICTED: agamous-like MADS-box protein AGL81
TrEMBLA0A1S3Z5N61e-170A0A1S3Z5N6_TOBAC; agamous-like MADS-box protein AGL81
STRINGXP_009592667.16e-50(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37231639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40120.15e-07AGAMOUS-like 76