PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016459689.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 204aa MW: 23424.5 Da PI: 8.7985

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016459689.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	184.2	5.2e-57	12	149	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaesk 97 +++CqdCGnqakkdC + RCRtCCksrgf+C+thvkstW+p+++rr r++ l++ ++++++++ +a++kr re+ ++ XP_016459689.1 12 SNSRCQDCGNQAKKDCPYLRCRTCCKSRGFQCQTHVKSTWIPVSRRRPRHHLLHTIQQQQQQQKqLQANPKRYREN--------------DNNLA 92 6789*******************************************999998866655443233444444433..............22223 PP DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + ++lP+e+s +avfrcvrvssvd+ +++aYqt+v+i+GhvfkGiLydqG+e+ XP_016459689.1 93 AGGKEEDLPTELSLPAVFRCVRVSSVDNVVDQYAYQTSVKIAGHVFKGILYDQGPET 149 3345678**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.0E-61	14	148	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.4E-27	16	57	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	7.4E-25	100	147	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MMMMMREDGI SSNSRCQDCG NQAKKDCPYL RCRTCCKSRG FQCQTHVKST WIPVSRRRPR 60 HHLLHTIQQQ QQQQKQLQAN PKRYRENDNN LAAGGKEEDL PTELSLPAVF RCVRVSSVDN 120 VVDQYAYQTS VKIAGHVFKG ILYDQGPETE THYTNMARES SSNGFQQEQL TTNLTQPLPS 180 YPSPFNNFMP GINIFCQIPK NHLL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009784128.1	1e-154	PREDICTED: protein SHI RELATED SEQUENCE 5-like isoform X3
Refseq	XP_016459689.1	1e-154	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Swissprot	Q9LQZ5	1e-52	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A1S3Z5R2	1e-153	A0A1S3Z5R2_TOBAC; protein SHI RELATED SEQUENCE 5-like
TrEMBL	A0A1U7WZW2	1e-153	A0A1U7WZW2_NICSY; protein SHI RELATED SEQUENCE 5-like isoform X3
STRING	XP_009784124.1	1e-141	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	5e-52	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]