PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016459710.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 311aa MW: 35885.5 Da PI: 4.6357

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016459710.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.1	2.6e-26	141	190	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +s e++skyF++pi++AAkeL+++lT+LK++CR++GI+RWPhRk+ sl XP_016459710.1 141 RMLSRENISKYFYMPITQAAKELNIGLTLLKKRCRELGIRRWPHRKLMSL 190 57899******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.871	125	210	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-21	143	190	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MRSQSNFEVM STNQENHQDV FSLPTQLPSL EFSGYSGHHA FDYQYDLSFQ EFDANPFMEF 60 TLDDPLYSSF FSTPVQCLTP GELCFGDLGN GFGLSNELGS GKNQLLLCDK NQEIIMTNDH 120 VEEITKKEKD SRQIEEINST RMLSRENISK YFYMPITQAA KELNIGLTLL KKRCRELGIR 180 RWPHRKLMSL QTLIKNVKEL EKGGESSMEQ KLKDVIKLLE EEKKMLEEVP DMELEEKTKR 240 LRQACFKANY KRRKLMSMTE LQASFGSYCN SNPAVGIGYG NREEEEEDDD DEEIKFLLAE 300 CFSSSSPTLN D

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016459710.1	0.0	PREDICTED: protein RKD1-like
TrEMBL	A0A1S3Z5F8	0.0	A0A1S3Z5F8_TOBAC; protein RKD1-like
STRING	XP_009778708.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4274	21	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	1e-47	RWP-RK domain-containing protein