PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016460317.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family YABBY
Protein Properties Length: 150aa    MW: 16788.4 Da    PI: 7.9417
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016460317.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY943.6e-29983578
           YABBY  5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkve 78
                     sse+vCyv+CnfCnt+lavsvP +s++++vtvrCGhC++llsvn+    q l+ ++ l+++ +++  + e+  ++
  XP_016460317.1  9 PSSERVCYVHCNFCNTMLAVSVPCNSMMTIVTVRCGHCANLLSVNIGSLLQSLPLQD-LQKQQRQQssIIEDASKA 83
                    689***************************************************999.555554443333332222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.7E-3110108IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MSLDITYSPS SERVCYVHCN FCNTMLAVSV PCNSMMTIVT VRCGHCANLL SVNIGSLLQS  60
LPLQDLQKQQ RQQSSIIEDA SKACGSSSST NYHRFSAIAT TPEDDQPRTM PIRRKLSFSL  120
SISFDLMLYI YFLCLPCRAN VTHQHIYLPA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6677652e-58KJ667765.1 Solanum melongena YAB2 protein mRNA, partial cds.
GenBankKJ6677682e-58KJ667768.1 Solanum aethiopicum YAB2 protein mRNA, partial cds.
GenBankKJ6677702e-58KJ667770.1 Solanum torvum YAB2 protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016460317.11e-108PREDICTED: protein YABBY 2-like isoform X1
SwissprotQ10FZ73e-24YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A1S3Z7Y21e-106A0A1S3Z7Y2_TOBAC; protein YABBY 2-like isoform X1
STRINGXP_009611997.12e-77(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.16e-21YABBY family protein