PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016460319.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family YABBY
Protein Properties Length: 148aa    MW: 16532.1 Da    PI: 7.679
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016460319.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY94.52.6e-29987584
           YABBY  5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlks 84
                     sse+vCyv+CnfCnt+lavsvP +s++++vtvrCGhC++llsvn+    q l+ ++ l+++ + ++ e+  ++  + +s
  XP_016460319.1  9 PSSERVCYVHCNFCNTMLAVSVPCNSMMTIVTVRCGHCANLLSVNIGSLLQSLPLQD-LQQRQQSSIIEDASKACGSSSS 87
                    689***************************************************999.6776666666665444333322 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.3E-3010106IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MSLDITYSPS SERVCYVHCN FCNTMLAVSV PCNSMMTIVT VRCGHCANLL SVNIGSLLQS  60
LPLQDLQQRQ QSSIIEDASK ACGSSSSTNY HRFSAIATTP EDDQPRTMPI RRKLSFSLSI  120
SFDLMLYIYF LCLPCRANVT HQHIYLPA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6677656e-58KJ667765.1 Solanum melongena YAB2 protein mRNA, partial cds.
GenBankKJ6677686e-58KJ667768.1 Solanum aethiopicum YAB2 protein mRNA, partial cds.
GenBankKJ6677706e-58KJ667770.1 Solanum torvum YAB2 protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016460319.11e-106PREDICTED: putative axial regulator YABBY 2 isoform X3
TrEMBLA0A1S3Z7I51e-104A0A1S3Z7I5_TOBAC; putative axial regulator YABBY 2 isoform X3
STRINGXP_009611997.17e-66(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.17e-21YABBY family protein