PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016460323.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 196aa    MW: 22091.7 Da    PI: 9.9151
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016460323.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof993.1e-311671560
          zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                    alkcprC+stntkfCy+nnyslsqPryfCk+C+r+Wtk G lr vP Gg r +++k
  XP_016460323.1 16 ALKCPRCESTNTKFCYFNNYSLSQPRYFCKTCKRHWTKDGVLRSVPEGGRRHRRNK 71
                    579*******************************************9997644433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-24169IPR003851Zinc finger, Dof-type
PROSITE profilePS5088425.2661771IPR003851Zinc finger, Dof-type
PfamPF027015.1E-291770IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MPEQARLANI RMPLVALKCP RCESTNTKFC YFNNYSLSQP RYFCKTCKRH WTKDGVLRSV  60
PEGGRRHRRN KLSNSNNNNN NNNNTSKSPA SSAKNDGLKA TTNNSGSFNS NRFYGLVNPQ  120
IPPLRFMSPL GQLTDHFHYH YTPSDNNSTL NYSAISSSAP VVETSIDSIQ LEMEAQQFPN  180
LMGRLDPSMS SGIYPF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016460323.11e-145PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBLA0A1S3Z7D81e-143A0A1S3Z7D8_TOBAC; dof zinc finger protein DOF2.4-like
STRINGXP_009621202.11e-142(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1824134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.12e-32DNA binding with one finger 2.4