PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016460408.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 389aa    MW: 44589.9 Da    PI: 5.7915
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016460408.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.94.8e-245715632128
             NAM  32 evikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWv 122
                       i+++diy++ P +L   ++ eek +yfF++r++ky++g ++ r+t+  +gyWk t k ++++++++ + g k++Lv+y  + + ++  kt+W+
  XP_016460408.1  57 GLIQDADIYECSPFQLS-GMDMEEKYTYFFTRRERKYPNGFKTDRSTRdgKGYWKITSKLTPIFTAGNLQFGKKNVLVYYlkTPKGQNDIKTNWI 150
                     469*************8.677788999******************9987789****************************4323555566***** PP

             NAM 123 mheyrl 128
                     mhe +l
  XP_016460408.1 151 MHELEL 156
                     ***876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.29325181IPR003441NAC domain
SuperFamilySSF1019411.28E-2654179IPR003441NAC domain
PfamPF023654.0E-969155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MSWPSFFRIC DGSLANATLT VIANTNPDLA FARSEDCNTA EAYQLFFQVK GEFIPPGLIQ  60
DADIYECSPF QLSGMDMEEK YTYFFTRRER KYPNGFKTDR STRDGKGYWK ITSKLTPIFT  120
AGNLQFGKKN VLVYYLKTPK GQNDIKTNWI MHELELNKSL FPRHAPEEKF NDFIVCRIYD  180
REKRKGDDQR DMVNSLIEPK QVMNHNNGEP LRSTKRKFKI NKTIINSNYL YNGHELQATA  240
ASDLGQTSSA DIMSTIMANP IADNHPQQVV QHTHVTGDQN VHLSNNNNNN ISNVFPRDVY  300
LSGEQNINSG HHRLVKSEGN VFNDPKLESS TSQHMRGDES IPLVPENDCW PPSEEFWDGL  360
PDMPPMDDFS NYMDLLGFDL DQTQPKTLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-183718236166NO APICAL MERISTEM PROTEIN
1ut4_B2e-183718236166NO APICAL MERISTEM PROTEIN
1ut7_A2e-183718236166NO APICAL MERISTEM PROTEIN
1ut7_B2e-183718236166NO APICAL MERISTEM PROTEIN
3swm_A2e-183718239169NAC domain-containing protein 19
3swm_B2e-183718239169NAC domain-containing protein 19
3swm_C2e-183718239169NAC domain-containing protein 19
3swm_D2e-183718239169NAC domain-containing protein 19
3swp_A2e-183718239169NAC domain-containing protein 19
3swp_B2e-183718239169NAC domain-containing protein 19
3swp_C2e-183718239169NAC domain-containing protein 19
3swp_D2e-183718239169NAC domain-containing protein 19
4dul_A2e-183718236166NAC domain-containing protein 19
4dul_B2e-183718236166NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016460408.10.0PREDICTED: NAC transcription factor 25-like
TrEMBLA0A1S3Z7M50.0A0A1S3Z7M5_TOBAC; NAC transcription factor 25-like
STRINGXP_009774531.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1786734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.23e-22Arabidopsis NAC domain containing protein 87