PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016460554.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 448aa MW: 51079.9 Da PI: 9.6845

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016460554.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.6	6.5e-26	31	118	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y eYA +GFsvrk++ +k+k +g +t+r+f+C keg+r+++k+ ++ +++r+etrtgC a++ +++++dgk+++t+++++HnH+l XP_016460554.1 31 CYIEYAAALGFSVRKEYANKNKVQGYVTSRKFTCHKEGYRSKDKRG-QTVQKHRKETRTGCLAHIIISRQSDGKFRITSFQEKHNHPLD 118 799**************************************999.99999*********************************97 PP
2	FAR1	84.2	2.1e-26	183	270	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +YneYA +GFs rk++ +ksk +g +t+r+f+C keg+r+++k++ ++ +++r+etrtgC a++ ++++++g++++t++e++HnH+l XP_016460554.1 183 WYNEYAAAMGFSARKEYANKSKVQGYVTSRKFTCHKEGYRSKDKRD-RTVQKHRKETRTGCLAHIIISRQSNGTFRITSFEEKHNHPLD 270 7****************************************999.99999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.5E-23	31	119	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.1E-23	183	271	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MEITSSESQG GFNVPIKLGM EFDSDEQAYE CYIEYAAALG FSVRKEYANK NKVQGYVTSR 60 KFTCHKEGYR SKDKRGQTVQ KHRKETRTGC LAHIIISRQS DGKFRITSFQ EKHNHPLDPS 120 SLSHILPSQR KIKVAQAHEV TARYKHLCLN RFMEITYSES QGGFNVPIKL GMEFDSDEHA 180 YEWYNEYAAA MGFSARKEYA NKSKVQGYVT SRKFTCHKEG YRSKDKRDRT VQKHRKETRT 240 GCLAHIIISR QSNGTFRITS FEEKHNHPLD PSLSDMLPSE RKIKVAQAHK VSVRYKHLCE 300 IFAQISSEAS ESKEGYELAA KCANELVAKL KHVKKRNESH EDSAPSKSIE NELNETIFID 360 NTNATKLTGL KRKQPTHRSN TRTMSFMEMT KSKNNTSLLK SPQCQTDKKL DHLPSLLSCQ 420 VTCPSLSDAS MTMGVPEGSC LKDHPMKV

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MEITSSESQG GFNVPIKLGM EFDSDEQAYE CYIEYAAALG FSVRKEYANK NKVQGYVTSR  60
KFTCHKEGYR SKDKRGQTVQ KHRKETRTGC LAHIIISRQS DGKFRITSFQ EKHNHPLDPS  120
SLSHILPSQR KIKVAQAHEV TARYKHLCLN RFMEITYSES QGGFNVPIKL GMEFDSDEHA  180
YEWYNEYAAA MGFSARKEYA NKSKVQGYVT SRKFTCHKEG YRSKDKRDRT VQKHRKETRT  240
GCLAHIIISR QSNGTFRITS FEEKHNHPLD PSLSDMLPSE RKIKVAQAHK VSVRYKHLCE  300
IFAQISSEAS ESKEGYELAA KCANELVAKL KHVKKRNESH EDSAPSKSIE NELNETIFID  360
NTNATKLTGL KRKQPTHRSN TRTMSFMEMT KSKNNTSLLK SPQCQTDKKL DHLPSLLSCQ  420
VTCPSLSDAS MTMGVPEGSC LKDHPMKV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016460554.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1
Refseq	XP_016460555.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1
Refseq	XP_016460556.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1
TrEMBL	A0A1S3Z873	0.0	A0A1S3Z873_TOBAC; protein FAR1-RELATED SEQUENCE 7-like isoform X1
STRING	XP_009765927.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3021	17	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	8e-31	FAR1-related sequence 7