PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016461438.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 405aa    MW: 47151.7 Da    PI: 6.5564
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016461438.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.44.4e-2482177186
        trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                     +Wt+q+v++Li+a+++++e+  ++           kk++W++vsk+m+erg  +sp+qC++k+++lnkryk+++e+ +++ ++e++++ +++d l
  XP_016461438.1  82 KWTDQMVRLLITAVSYIGEETAAEYggrrkcsnlHKKGKWKSVSKVMAERGHFVSPQQCEDKFSDLNKRYKRLNEILGRGtSCEVVENPVLLDML 176
                     7**************999988864223344567799********************************************669999999998888 PP

        trihelix  86 e 86 
                     +
  XP_016461438.1 177 D 177
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.7E-2280203No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MRANHQQLQH YQSHSKQGAI NANFPLTIGS MQQDCNQNIS LADHSKGERG KSASDEDEPS  60
FTEDGLNDLN RGKKATPWQR VKWTDQMVRL LITAVSYIGE ETAAEYGGRR KCSNLHKKGK  120
WKSVSKVMAE RGHFVSPQQC EDKFSDLNKR YKRLNEILGR GTSCEVVENP VLLDMLDHVS  180
EKGKEEVRKI LSSKHLHYEE MCSYHNGNRL HLPPDLELQR SLRLALTSRD EHDDNDVRKH  240
LQDDNDEDDH ETDMVEDEYE ESHSLPREHR LHGMSGGFSK RIKQCQGHEI VTFGNSLTTL  300
DGNRTFSSQP QKANTDANQM FSEGNKADIL QKQWMDHRSF QLEEQKLQIQ AQMLELEKER  360
FNWKRFSRKK DIELEMMRME NERIKLENEC MALELKRKEM LADNV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016461437.10.0PREDICTED: uncharacterized protein LOC107784772 isoform X1
RefseqXP_016461438.10.0PREDICTED: uncharacterized protein LOC107784772 isoform X2
TrEMBLA0A1S3ZAN20.0A0A1S3ZAN2_TOBAC; uncharacterized protein LOC107784772 isoform X2
TrEMBLA0A1S3ZB380.0A0A1S3ZB38_TOBAC; uncharacterized protein LOC107784772 isoform X1
STRINGXP_009590352.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-142sequence-specific DNA binding transcription factors