PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016461505.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 442aa    MW: 49473.5 Da    PI: 6.6803
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016461505.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.8e-17111156147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g WT eEd +l+++vkq+G + W+ Ia++m   R +kqc++rw+++
   XP_016461505.1 111 KGQWTDEEDRKLLRLVKQFGERKWAQIAEKMD-ARAGKQCRERWHNH 156
                      799*****************************.************98 PP
2Myb_DNA-binding56.37.2e-18163205145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W++eE++llv+ +kqlG++ W+ Ia++++ gRt +++k++w+
   XP_016461505.1 163 KDTWSEEEELLLVETHKQLGNK-WAEIAKRIP-GRTQNSIKNHWN 205
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.215106161IPR017930Myb domain
SMARTSM007173.6E-14110159IPR001005SANT/Myb domain
SuperFamilySSF466891.94E-28110204IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-25112164IPR009057Homeodomain-like
CDDcd001673.11E-14114157No hitNo description
PfamPF139211.3E-18114173No hitNo description
SMARTSM007172.3E-15162210IPR001005SANT/Myb domain
PROSITE profilePS5129418.902162212IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-20165210IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MESGSAFRPY QNLPKPSPPL TAIDKFLLSH ENDFYPFSGA NASSGSSSSS SSHANGISWP  60
ISLPDPSFIE GFFLNEQENG LIEDAKTVQK NKRESWKKAK EGNSTKNYLV KGQWTDEEDR  120
KLLRLVKQFG ERKWAQIAEK MDARAGKQCR ERWHNHFHPD IKKDTWSEEE ELLLVETHKQ  180
LGNKWAEIAK RIPGRTQNSI KNHWNATKRR MNSRRNKKRK NQQDGGQKEG SNFFQDYIRS  240
VYFTDDSSPT ASSFYGGGGG GSGGGSSTAT TVVTPSNSTN TNATPPYTDD DALSLITHQT  300
CDEEMNFMQN LFGKNSLILC DNKAIDHSKE AKETQNLFDN NSSMISSAFN SFPLAKGNVG  360
SYSTASTEKV TDEVGNYMPD YNTKEVNQHY YCPDIYLSYL LDGSSYMMNQ ASGCSSGGNN  420
KVEVDLMEMV LSSQGTFNNT FF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-421092102103C-Myb DNA-Binding Domain
1msf_C2e-421092102103C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207218KRRMNSRRNKKR
2213219RRNKKRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754452e-48HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016461505.10.0PREDICTED: transcription factor MYB44-like
TrEMBLA0A1S3ZAM20.0A0A1S3ZAM2_TOBAC; transcription factor MYB44-like
STRINGXP_009592355.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.13e-59myb domain protein 119